Ss1.1-rcly26b_n20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATTATTTTAATTTAGAAATAAAAAAAATCTGGGAAGAAAAAAAAACACAAAAGATACA GGCAAATTTTCACTCCATGAGCTTCTGGAATCCTCACTGGTTCATCAATCCCCAAGACGA AAAACACGGTTTTAAAAAGGTATTCAGCCACCAACAATGATGTTATTAATAGGAATATGG ATCAATTTCACAAAAAAACCAATGAATCCCATTATAGCAAATCCTATGGCTGTGGCCAGG GCAATCTAAGACCCCCGGGGGAACACCATCTACAGGGAAACCAAGAAGCAATATGACAGC TTCACGCACCGGGCTGAGGTCAAGGGCGTCTATCAGTTTGGCTTCAGTAATGAGTTTTCC ACCTTCTCTCATAAGACCGTCTACTTGGATTTTCAAGTGGGCGACGAGCCTCCTATTCTC CCAGACATGGGGAACAGGGTCACAGCTCTCACCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATTATTTTAATTTAGAAATAAAAAAAATCTGGGAAGAAAAAAAAACACAAAAGATACA GGCAAATTTTCACTCCATGAGCTTCTGGAATCCTCACTGGTTCATCAATCCCCAAGACGA AAAACACGGTTTTAAAAAGGTATTCAGCCACCAACAATGATGTTATTAATAGGAATATGG ATCAATTTCACAAAAAAACCAATGAATCCCATTATAGCAAATCCTATGGCTGTGGCCAGG GCAATCTAAGACCCCCGGGGGAACACCATCTACAGGGAAACCAAGAAGCAATATGACAGC TTCACGCACCGGGCTGAGGTCAAGGGCGTCTATCAGTTTGGCTTCAGTAATGAGTTTTCC ACCTTCTCTCATAAGACCGTCTACTTGGATTTTCAAGTGGGCGACGAGCCTCCTATTCTC CCAGACATGGGGAACAGGGTCACAGCTCTCACCCAG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 338-456, - strand, RNAz p=0.988972 | |
| 364-456, - strand, RNAz p=0.720642 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 338-456, - strand, RNAz p=0.988972 | |
| 364-456, - strand, RNAz p=0.720642 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 69-222, gnl|bosTau2|chr9 (36331963-36331812) | |
| 69-222, gnl|Mm7|chrX (146869048-146869185) | |
| 248-456, gnl|bosTau2|chr21 (18546211-18546419) | |
| 248-456, gnl|canFam2|chr3 (60700577-60700308) | |
| 248-456, gnl|danRer3|chr7 (20920485-20920751) | |
| 248-456, gnl|dasNov1|scaffold_22076 (3516-3265) | |
| 248-456, gnl|echTel1|scaffold_292531 (109698-109429) | |
| 248-456, gnl|fr1|chrUn (144639400-144639146) | |
| 248-456, gnl|galGal2|chr10 (20591745-20592012) | |
| 248-456, gnl|hg17|chr15 (77393152-77393421) | |
| 248-456, gnl|Hg17|chr15 (77393194-77393402) | |
| 248-456, gnl|loxAfr1|scaffold_6523 (22055-22324) | |
| 248-456, gnl|mm7|chr9 (89331528-89331259) | |
| 248-456, gnl|Mm7|chr9 (89331484-89331276) | |
| 248-456, gnl|monDom2|scaffold_45 (8717659-8717391) | |
| 248-456, gnl|oryCun1|scaffold_152000 (15613-15867) | |
| 248-456, gnl|panTro1|chr16 (78102963-78103232) | |
| 248-456, gnl|rheMac2|chr7 (58439396-58439665) | |
| 248-456, gnl|rn3|chr8 (94615770-94615507) | |
| 248-456, gnl|tetNig1|chr12 (7800452-7800713) | |
| 248-456, gnl|xenTro1|scaffold_2 (7201988-7202265) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 69-222, gnl|bosTau2|chr9 (36331963-36331812) | |
| 69-222, gnl|Mm7|chrX (146869048-146869185) | |
| 248-456, gnl|bosTau2|chr21 (18546211-18546419) | |
| 248-456, gnl|canFam2|chr3 (60700577-60700308) | |
| 248-456, gnl|danRer3|chr7 (20920485-20920751) | |
| 248-456, gnl|dasNov1|scaffold_22076 (3516-3265) | |
| 248-456, gnl|echTel1|scaffold_292531 (109698-109429) | |
| 248-456, gnl|fr1|chrUn (144639400-144639146) | |
| 248-456, gnl|galGal2|chr10 (20591745-20592012) | |
| 248-456, gnl|hg17|chr15 (77393152-77393421) | |
| 248-456, gnl|Hg17|chr15 (77393194-77393402) | |
| 248-456, gnl|loxAfr1|scaffold_6523 (22055-22324) | |
| 248-456, gnl|mm7|chr9 (89331528-89331259) | |
| 248-456, gnl|Mm7|chr9 (89331484-89331276) | |
| 248-456, gnl|monDom2|scaffold_45 (8717659-8717391) | |
| 248-456, gnl|oryCun1|scaffold_152000 (15613-15867) | |
| 248-456, gnl|panTro1|chr16 (78102963-78103232) | |
| 248-456, gnl|rheMac2|chr7 (58439396-58439665) | |
| 248-456, gnl|rn3|chr8 (94615770-94615507) | |
| 248-456, gnl|tetNig1|chr12 (7800452-7800713) | |
| 248-456, gnl|xenTro1|scaffold_2 (7201988-7202265) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) | |
| cly (0.120642) |