Non-Coding RNA Search

Ss1.1-rcly27b_m23.5

Sequence:


               
               AAATGATCAGCACAGCCTATACCCTCATGCTCTCCTGTGGCTCCAAGCCAGAGACATCGG
TGACAAATAGCACCTGTGTTGTCTGTGAGCCGTCCCAGTTCAAGTCCTGATGTGTGTGCA
TTGTTTTTTTCCTGGCCACTTAATACGTAGGACCATAAGTAAACTTGACTTTGACTGCAT
GAGATGTCCCTATCTGGTCTCACCCAGCCCTCTGCACCCGACATTCCCAGGACATGCATG
ATCACCAGCATTTATTTTCATGATTGGAGGGTGTTACTCTAAGTCACAGGTTGTCAGCGT
CCAGCCGTGTCCTATCTAGATTAGGAAATTTATCAGCTTCCTCCAGCGACACAAGGCTGG
GTACGGTCACTCTTTTGAGTCAAAGACTTCTTCGCTCTGTTAAAATTCCTGGAGGCAAAA
CTGAGCTTGGCCCCAGAGAGACCCCTCCATAGATTTTGAACATGACCTCCCACGTAGAAC
TTCCCCAGCCTCATTGGGGAGGCTTGTCCAGGGTGATAGAGACCGATTTCGGACAAATCT
ATTTATTACAAAAGTTTCATGGTGTCTGAACGATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGATCAGCACAGCCTATACCCTCATGCTCTCCTGTGGCTCCAAGCCAGAGACATCGG
TGACAAATAGCACCTGTGTTGTCTGTGAGCCGTCCCAGTTCAAGTCCTGATGTGTGTGCA
TTGTTTTTTTCCTGGCCACTTAATACGTAGGACCATAAGTAAACTTGACTTTGACTGCAT
GAGATGTCCCTATCTGGTCTCACCCAGCCCTCTGCACCCGACATTCCCAGGACATGCATG
ATCACCAGCATTTATTTTCATGATTGGAGGGTGTTACTCTAAGTCACAGGTTGTCAGCGT
CCAGCCGTGTCCTATCTAGATTAGGAAATTTATCAGCTTCCTCCAGCGACACAAGGCTGG
GTACGGTCACTCTTTTGAGTCAAAGACTTCTTCGCTCTGTTAAAATTCCTGGAGGCAAAA
CTGAGCTTGGCCCCAGAGAGACCCCTCCATAGATTTTGAACATGACCTCCCACGTAGAAC
TTCCCCAGCCTCATTGGGGAGGCTTGTCCAGGGTGATAGAGACCGATTTCGGACAAATCT
ATTTATTACAAAAGTTTCATGGTGTCTGAACGATTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               109-210, - strand, RNAz p=0.621129

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               109-210, - strand, RNAz p=0.621129

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-265, gnl|bosTau2|chr23 (18381502-18381767)
               

               
               1-265, gnl|canFam2|chr12 (17431931-17432139)
               

               
               1-265, gnl|dasNov1|scaffold_3985 (78969-78761)
               

               
               1-265, gnl|echTel1|scaffold_309660 (45902-45679)
               

               
               1-265, gnl|hg17|chr6 (46298332-46298540)
               

               
               1-265, gnl|Hg17|chr6 (46298594-46298333)
               

               
               1-265, gnl|loxAfr1|scaffold_35531 (5728-5934)
               

               
               1-265, gnl|mm7|chr17 (42160229-42159993)
               

               
               1-265, gnl|Mm7|chr17 (42159937-42160225)
               

               
               1-265, gnl|monDom2|scaffold_0 (193795271-193795057)
               

               
               1-265, gnl|oryCun1|scaffold_192008 (8777-8978)
               

               
               1-265, gnl|panTro1|chr5 (47045426-47045634)
               

               
               1-265, gnl|rheMac2|chr4 (46069439-46069647)
               

               
               1-265, gnl|rn3|chr9 (12622289-12622543)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-265, gnl|bosTau2|chr23 (18381502-18381767)
               

               
               1-265, gnl|canFam2|chr12 (17431931-17432139)
               

               
               1-265, gnl|dasNov1|scaffold_3985 (78969-78761)
               

               
               1-265, gnl|echTel1|scaffold_309660 (45902-45679)
               

               
               1-265, gnl|hg17|chr6 (46298332-46298540)
               

               
               1-265, gnl|Hg17|chr6 (46298594-46298333)
               

               
               1-265, gnl|loxAfr1|scaffold_35531 (5728-5934)
               

               
               1-265, gnl|mm7|chr17 (42160229-42159993)
               

               
               1-265, gnl|Mm7|chr17 (42159937-42160225)
               

               
               1-265, gnl|monDom2|scaffold_0 (193795271-193795057)
               

               
               1-265, gnl|oryCun1|scaffold_192008 (8777-8978)
               

               
               1-265, gnl|panTro1|chr5 (47045426-47045634)
               

               
               1-265, gnl|rheMac2|chr4 (46069439-46069647)
               

               
               1-265, gnl|rn3|chr9 (12622289-12622543)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               ece (0.229305)
               

               
               mas (0.210305)
               

               
               ste (0.135208)
               

               
               cly (0.120642)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               ste (0.135208)
               

               
               cly (0.120642)

	1-265, gnl\|bosTau2\|chr23 (18381502-18381767)
	1-265, gnl\|canFam2\|chr12 (17431931-17432139)
	1-265, gnl\|dasNov1\|scaffold_3985 (78969-78761)
	1-265, gnl\|echTel1\|scaffold_309660 (45902-45679)
	1-265, gnl\|hg17\|chr6 (46298332-46298540)
	1-265, gnl\|Hg17\|chr6 (46298594-46298333)
	1-265, gnl\|loxAfr1\|scaffold_35531 (5728-5934)
	1-265, gnl\|mm7\|chr17 (42160229-42159993)
	1-265, gnl\|Mm7\|chr17 (42159937-42160225)
	1-265, gnl\|monDom2\|scaffold_0 (193795271-193795057)
	1-265, gnl\|oryCun1\|scaffold_192008 (8777-8978)
	1-265, gnl\|panTro1\|chr5 (47045426-47045634)
	1-265, gnl\|rheMac2\|chr4 (46069439-46069647)
	1-265, gnl\|rn3\|chr9 (12622289-12622543)