Ss1.1-rcly28b_d5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTGGGCAAGGGTACCCAGGCACCCAGCTGGCCTGGGGGGTGGGCAAGAAATGAAGGGT AACACAACTTGCAGGGTCTGGAGAGCTCTTGTAGGAGGCAGTGTACTGTAAACGTTCAAA CACTTCTGGAAAATTGGGGCCATCTGCTGCCAAAGTCCAGCAGTTTGGAGACGGGCTGCA GTTGTTGTTGGGCAGGAAGCTGAGACTGAGGCAGGCAAGACGGCTTTGACCTGGCTTCCA GCCCGGTATCCTGAGCTAGGGCAGGGCCAGGCTCCTGGTCGGCCACTCCCCCACCCACCC CCTACCAGGTGCACCGCCTTTAAAGGGACAGGTCTCATTTACTCCAGCAGTTCCCACACC AGGCTAAGCGTAAGGACCTCCAGGGAAGATATAGAAAAGCCCGTACCCCAGAAGATTTGG AGTAGGGCAGTCATAGCTGCCAATCTCCAGAAGAGATTCTAATTGCCTGCTGGGTTTAGT GAAAAATAGCAGCATCAGAGAAAAGGACTCTGCTAGTTCGCAGGTGGAATCTGGACACCC TAAGCCTCCTGGACACCACGGAAATCTCCACCCATCGAGATGCCTATGGGAGTCTCTGTG GGACTTGGGAAAGGACAGAAAGGGACTGCCAGCCTGAGGATTGGGAGCATGCTGAGAAAT GCTGGATGCTGGACAGCAACTCCTGGAGGTTACAGGCTCCCAGAGCGGCAGGAGGAGTGA TGAGAACAGCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTGGGCAAGGGTACCCAGGCACCCAGCTGGCCTGGGGGGTGGGCAAGAAATGAAGGGT AACACAACTTGCAGGGTCTGGAGAGCTCTTGTAGGAGGCAGTGTACTGTAAACGTTCAAA CACTTCTGGAAAATTGGGGCCATCTGCTGCCAAAGTCCAGCAGTTTGGAGACGGGCTGCA GTTGTTGTTGGGCAGGAAGCTGAGACTGAGGCAGGCAAGACGGCTTTGACCTGGCTTCCA GCCCGGTATCCTGAGCTAGGGCAGGGCCAGGCTCCTGGTCGGCCACTCCCCCACCCACCC CCTACCAGGTGCACCGCCTTTAAAGGGACAGGTCTCATTTACTCCAGCAGTTCCCACACC AGGCTAAGCGTAAGGACCTCCAGGGAAGATATAGAAAAGCCCGTACCCCAGAAGATTTGG AGTAGGGCAGTCATAGCTGCCAATCTCCAGAAGAGATTCTAATTGCCTGCTGGGTTTAGT GAAAAATAGCAGCATCAGAGAAAAGGACTCTGCTAGTTCGCAGGTGGAATCTGGACACCC TAAGCCTCCTGGACACCACGGAAATCTCCACCCATCGAGATGCCTATGGGAGTCTCTGTG GGACTTGGGAAAGGACAGAAAGGGACTGCCAGCCTGAGGATTGGGAGCATGCTGAGAAAT GCTGGATGCTGGACAGCAACTCCTGGAGGTTACAGGCTCCCAGAGCGGCAGGAGGAGTGA TGAGAACAGCAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 606-729, - strand, RNAz p=0.989093 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 606-729, - strand, RNAz p=0.989093 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 20-252, gnl|bosTau2|chr21 (5004885-5005117) | |
| 20-252, gnl|canFam2|chr3 (43650777-43650320) | |
| 20-252, gnl|hg17|chr15 (98499309-98499722) | |
| 20-252, gnl|Hg17|chr15 (98499429-98499643) | |
| 20-252, gnl|mm7|chr7 (62871656-62871241) | |
| 20-252, gnl|Mm7|chr7 (62871544-62871326) | |
| 20-252, gnl|monDom2|scaffold_12 (60641946-60641516) | |
| 20-252, gnl|oryCun1|scaffold_149956 (17904-18266) | |
| 20-252, gnl|panTro1|chr16 (99609571-99609984) | |
| 20-252, gnl|rheMac2|chr7 (80300247-80300672) | |
| 20-252, gnl|rn3|chr1 (121580334-121579938) | |
| 410-729, gnl|bosTau2|chr21 (5005329-5005651) | |
| 410-729, gnl|canFam2|chr3 (43650261-43649625) | |
| 410-729, gnl|dasNov1|scaffold_78128 (14-694) | |
| 410-729, gnl|hg17|chr15 (98499781-98500429) | |
| 410-729, gnl|Hg17|chr15 (98499841-98500130) | |
| 410-729, gnl|mm7|chr7 (62871182-62870581) | |
| 410-729, gnl|Mm7|chr7 (62871158-62870860) | |
| 410-729, gnl|oryCun1|scaffold_149956 (18324-18954) | |
| 410-729, gnl|panTro1|chr16 (99610043-99610691) | |
| 410-729, gnl|rheMac2|chr7 (80300731-80301369) | |
| 410-729, gnl|rn3|chr1 (121579879-121579226) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 20-252, gnl|bosTau2|chr21 (5004885-5005117) | |
| 20-252, gnl|canFam2|chr3 (43650777-43650320) | |
| 20-252, gnl|hg17|chr15 (98499309-98499722) | |
| 20-252, gnl|Hg17|chr15 (98499429-98499643) | |
| 20-252, gnl|mm7|chr7 (62871656-62871241) | |
| 20-252, gnl|Mm7|chr7 (62871544-62871326) | |
| 20-252, gnl|monDom2|scaffold_12 (60641946-60641516) | |
| 20-252, gnl|oryCun1|scaffold_149956 (17904-18266) | |
| 20-252, gnl|panTro1|chr16 (99609571-99609984) | |
| 20-252, gnl|rheMac2|chr7 (80300247-80300672) | |
| 20-252, gnl|rn3|chr1 (121580334-121579938) | |
| 410-729, gnl|bosTau2|chr21 (5005329-5005651) | |
| 410-729, gnl|canFam2|chr3 (43650261-43649625) | |
| 410-729, gnl|dasNov1|scaffold_78128 (14-694) | |
| 410-729, gnl|hg17|chr15 (98499781-98500429) | |
| 410-729, gnl|Hg17|chr15 (98499841-98500130) | |
| 410-729, gnl|mm7|chr7 (62871182-62870581) | |
| 410-729, gnl|Mm7|chr7 (62871158-62870860) | |
| 410-729, gnl|oryCun1|scaffold_149956 (18324-18954) | |
| 410-729, gnl|panTro1|chr16 (99610043-99610691) | |
| 410-729, gnl|rheMac2|chr7 (80300731-80301369) | |
| 410-729, gnl|rn3|chr1 (121579879-121579226) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.120642) |