Non-Coding RNA Search

Ss1.1-rcly30b_m15.5

Sequence:


               
               ATTCATTGCCTAACCCCCAGCTCTCATTTTTCCTGCCCTTTCACACCAGTAGAAATAATG
TGCCATTTTTTTCCCCATTGCTTGAGCCCTGTGTATTATTCTTCCCTATGAGTCCCTTTG
CAGATTCCCACTTCTGTCCAGCAGGCTGGTAACTCTGCCCCCACCCCCAGCTTTCACTGT
GGCTGTTAGCAACATCCTGGGGTTTTCACTCCACCCACACCCGATCTGGCCGTCTAGAGG
GATTCCACGCCTGTGCTGCTGCCTCCCCTAGAGACATTCAGGTTACTGGAGAGCTAATCT
CATCTCAAGGGGCCAGACACCAAGTCCCAAAGCCTACAGACCTCTTTCCGCCAGACCCTG
AAACTTGGCCCAGTGCCAGCAGGATGACAAGCCCCAGGGTGCTCCCGATGCATATGGATT
GGAGATGATGTACAGTTTTTAATTCCCCTCTGGCTCTGGAGGAATGAAATGATTTGCACA
TTGAAAACCTGTTAACCGTAGCCTCTGGACACTGAAACTGGAAGGAGAATAAAGGATGCT
TGTTGTTTTTAAACTGCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCATTGCCTAACCCCCAGCTCTCATTTTTCCTGCCCTTTCACACCAGTAGAAATAATG
TGCCATTTTTTTCCCCATTGCTTGAGCCCTGTGTATTATTCTTCCCTATGAGTCCCTTTG
CAGATTCCCACTTCTGTCCAGCAGGCTGGTAACTCTGCCCCCACCCCCAGCTTTCACTGT
GGCTGTTAGCAACATCCTGGGGTTTTCACTCCACCCACACCCGATCTGGCCGTCTAGAGG
GATTCCACGCCTGTGCTGCTGCCTCCCCTAGAGACATTCAGGTTACTGGAGAGCTAATCT
CATCTCAAGGGGCCAGACACCAAGTCCCAAAGCCTACAGACCTCTTTCCGCCAGACCCTG
AAACTTGGCCCAGTGCCAGCAGGATGACAAGCCCCAGGGTGCTCCCGATGCATATGGATT
GGAGATGATGTACAGTTTTTAATTCCCCTCTGGCTCTGGAGGAATGAAATGATTTGCACA
TTGAAAACCTGTTAACCGTAGCCTCTGGACACTGAAACTGGAAGGAGAATAAAGGATGCT
TGTTGTTTTTAAACTGCAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               265-464, - strand, RNAz p=0.853771

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               265-464, - strand, RNAz p=0.853771

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               307-426, - strand, RNAmicro p=0.999949

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               307-426, - strand, RNAmicro p=0.999949

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-558, gnl|bosTau2|chr16 (4213161-4213708)
               

               
               1-558, gnl|canFam2|chr38 (5732710-5733485)
               

               
               1-558, gnl|dasNov1|scaffold_56785 (9242-9983)
               

               
               1-558, gnl|echTel1|scaffold_229154 (4108-4839)
               

               
               1-558, gnl|hg17|chr1 (203017268-203018037)
               

               
               1-558, gnl|Hg17|chr1 (203017354-203017906)
               

               
               1-558, gnl|loxAfr1|scaffold_36827 (13464-14231)
               

               
               1-558, gnl|mm7|chr1 (131199970-131199231)
               

               
               1-558, gnl|Mm7|chr1 (131199887-131199347)
               

               
               1-558, gnl|monDom2|scaffold_13 (8405288-8406068)
               

               
               1-558, gnl|oryCun1|scaffold_206495 (176934-177676)
               

               
               1-558, gnl|panTro1|chr1 (186601506-186602275)
               

               
               1-558, gnl|rheMac2|chr1 (163906925-163906152)
               

               
               1-558, gnl|rn3|chr13 (44254608-44253871)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-558, gnl|bosTau2|chr16 (4213161-4213708)
               

               
               1-558, gnl|canFam2|chr38 (5732710-5733485)
               

               
               1-558, gnl|dasNov1|scaffold_56785 (9242-9983)
               

               
               1-558, gnl|echTel1|scaffold_229154 (4108-4839)
               

               
               1-558, gnl|hg17|chr1 (203017268-203018037)
               

               
               1-558, gnl|Hg17|chr1 (203017354-203017906)
               

               
               1-558, gnl|loxAfr1|scaffold_36827 (13464-14231)
               

               
               1-558, gnl|mm7|chr1 (131199970-131199231)
               

               
               1-558, gnl|Mm7|chr1 (131199887-131199347)
               

               
               1-558, gnl|monDom2|scaffold_13 (8405288-8406068)
               

               
               1-558, gnl|oryCun1|scaffold_206495 (176934-177676)
               

               
               1-558, gnl|panTro1|chr1 (186601506-186602275)
               

               
               1-558, gnl|rheMac2|chr1 (163906925-163906152)
               

               
               1-558, gnl|rn3|chr13 (44254608-44253871)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cag (0.151194)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               cly (0.120642)

	1-558, gnl\|bosTau2\|chr16 (4213161-4213708)
	1-558, gnl\|canFam2\|chr38 (5732710-5733485)
	1-558, gnl\|dasNov1\|scaffold_56785 (9242-9983)
	1-558, gnl\|echTel1\|scaffold_229154 (4108-4839)
	1-558, gnl\|hg17\|chr1 (203017268-203018037)
	1-558, gnl\|Hg17\|chr1 (203017354-203017906)
	1-558, gnl\|loxAfr1\|scaffold_36827 (13464-14231)
	1-558, gnl\|mm7\|chr1 (131199970-131199231)
	1-558, gnl\|Mm7\|chr1 (131199887-131199347)
	1-558, gnl\|monDom2\|scaffold_13 (8405288-8406068)
	1-558, gnl\|oryCun1\|scaffold_206495 (176934-177676)
	1-558, gnl\|panTro1\|chr1 (186601506-186602275)
	1-558, gnl\|rheMac2\|chr1 (163906925-163906152)
	1-558, gnl\|rn3\|chr13 (44254608-44253871)