Non-Coding RNA Search

Ss1.1-rcly31b_k16.5

Sequence:


               
               CCTGGGTGGACATGACCGGCGGCCACATCGCCTACAAGAACTGGGAGACAGAGATCACTG
CGCAGCCTGATGGCGGTAAGGTGGAGAACTGCGCCGCCCTGGCTGGCGCGGCCAACGGCA
AGTGGTTCGACAAGCGCTGCCGGGACAAGCTGCCCTACGTCTGCCAGTTCGCCATCGTGT
AGCGGGCGAGGCGGGGCGGGGCTGGGCGGGGCCGGGGCCGGGGCGGGGCGAGCAGGAGGA
GGATCCTGAGCCGCTGGAGGAGCAGCGCTGGGACTTTCCCTTCAGGCATCCCCGCCACGC
TGGGAGCCTTCTTTTGCAAATAAAGTGGGTGCAGCTTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGGTGGACATGACCGGCGGCCACATCGCCTACAAGAACTGGGAGACAGAGATCACTG
CGCAGCCTGATGGCGGTAAGGTGGAGAACTGCGCCGCCCTGGCTGGCGCGGCCAACGGCA
AGTGGTTCGACAAGCGCTGCCGGGACAAGCTGCCCTACGTCTGCCAGTTCGCCATCGTGT
AGCGGGCGAGGCGGGGCGGGGCTGGGCGGGGCCGGGGCCGGGGCGGGGCGAGCAGGAGGA
GGATCCTGAGCCGCTGGAGGAGCAGCGCTGGGACTTTCCCTTCAGGCATCCCCGCCACGC
TGGGAGCCTTCTTTTGCAAATAAAGTGGGTGCAGCTTAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|51247291|pdb|1RJH|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51247291|pdb|1RJH|A

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-240, gnl|bosTau2|chr9 (21558263-21558503)
               

               
               2-240, gnl|Hg17|chr3 (45052240-45052491)
               

               
               2-240, gnl|Mm7|chr9 (122862365-122862598)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-240, gnl|bosTau2|chr9 (21558263-21558503)
               

               
               2-240, gnl|Hg17|chr3 (45052240-45052491)
               

               
               2-240, gnl|Mm7|chr9 (122862365-122862598)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cov (0.264306)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               cly (0.120642)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               cly (0.120642)

	2-240, gnl\|bosTau2\|chr9 (21558263-21558503)
	2-240, gnl\|Hg17\|chr3 (45052240-45052491)
	2-240, gnl\|Mm7\|chr9 (122862365-122862598)

	cov (0.264306)
	nco (0.161734)
	cli (0.152812)
	cag (0.151194)
	csk (0.140746)
	cly (0.120642)