Ss1.1-rcly31b_m22.5
|
GTCCAGCAGCGTCATCTGCATCATGGGGCGCCTCGGACCCTCCAATGGACTCCTGCCTCT
CCTCCTGGCTGTGGGTGGTTTCAGCCTTGTCCAGGCCCAGAGAGAATGCAGCTGCTCCGC
CGTGAGCCCCGGCATCCTGGCGGGGATCGTGCTGGGGGATCTGGTGCTGACCCTCCTCAT
CGCCCTGGCTGTGTACTCCCTGGGTCGGCTGGTCCCTCGGACACGTGGTGGGGCCGTGGA
AGTGACCCGGAAACAGCACATCGCTGAGACAGAGTCTGCTTATCAGGAGCTCCAAGGCCA
GAGGTCAGATGTCTACAGCGACCTCAACACACAGAGGCAGTATTACAAATGAGCCCAAAT
CAGGACAGTCATCAACCCGATGCCTGGATCCAGTCATTCCTGATGCCTGCCCAGCACCCC
GTTCTGCTCCCACCAGGATACGGATCCACAGAGTATCCTCCATGTCAGACCTCTCCCCAC
GACTGTCCCCAAATAAACATGGAGGACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTCCAGCAGCGTCATCTGCATCATGGGGCGCCTCGGACCCTCCAATGGACTCCTGCCTCT
CCTCCTGGCTGTGGGTGGTTTCAGCCTTGTCCAGGCCCAGAGAGAATGCAGCTGCTCCGC
CGTGAGCCCCGGCATCCTGGCGGGGATCGTGCTGGGGGATCTGGTGCTGACCCTCCTCAT
CGCCCTGGCTGTGTACTCCCTGGGTCGGCTGGTCCCTCGGACACGTGGTGGGGCCGTGGA
AGTGACCCGGAAACAGCACATCGCTGAGACAGAGTCTGCTTATCAGGAGCTCCAAGGCCA
GAGGTCAGATGTCTACAGCGACCTCAACACACAGAGGCAGTATTACAAATGAGCCCAAAT
CAGGACAGTCATCAACCCGATGCCTGGATCCAGTCATTCCTGATGCCTGCCCAGCACCCC
GTTCTGCTCCCACCAGGATACGGATCCACAGAGTATCCTCCATGTCAGACCTCTCCCCAC
GACTGTCCCCAAATAAACATGGAGGACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
103-220, gnl|bosTau2|chr18 (41712953-41712836) |
|
103-220, gnl|canFam2|chr1 (119667221-119666843) |
|
103-220, gnl|hg17|chr19 (41090119-41090513) |
|
103-220, gnl|Hg17|chr19 (41090323-41090207) |
|
103-220, gnl|loxAfr1|scaffold_83337 (2969-3365) |
|
103-220, gnl|mm7|chr7 (27357924-27357534) |
|
103-220, gnl|Mm7|chr7 (27357713-27357830) |
|
103-220, gnl|monDom2|scaffold_139 (1979187-1979682) |
|
103-220, gnl|panTro1|chr20 (37932444-37932837) |
|
103-220, gnl|rheMac2|chr19 (42390855-42391247) |
|
103-220, gnl|rn3|chr1 (85444388-85443992) |
| |
|
285-515, gnl|bosTau2|chr18 (41710991-41710754) |
|
285-515, gnl|canFam2|chr1 (119669504-119668902) |
|
285-515, gnl|hg17|chr19 (41087136-41087695) |
|
285-515, gnl|Hg17|chr19 (41087378-41087143) |
|
285-515, gnl|loxAfr1|scaffold_83337 (1787-2391) |
|
285-515, gnl|mm7|chr7 (27360801-27360230) |
|
285-515, gnl|Mm7|chr7 (27360541-27360784) |
|
285-515, gnl|oryCun1|scaffold_168460 (7862-7348) |
|
285-515, gnl|panTro1|chr20 (37929462-37930020) |
|
285-515, gnl|rheMac2|chr19 (42387633-42388199) |
|
285-515, gnl|rn3|chr1 (85447355-85446778) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
103-220, gnl|bosTau2|chr18 (41712953-41712836) |
|
103-220, gnl|canFam2|chr1 (119667221-119666843) |
|
103-220, gnl|hg17|chr19 (41090119-41090513) |
|
103-220, gnl|Hg17|chr19 (41090323-41090207) |
|
103-220, gnl|loxAfr1|scaffold_83337 (2969-3365) |
|
103-220, gnl|mm7|chr7 (27357924-27357534) |
|
103-220, gnl|Mm7|chr7 (27357713-27357830) |
|
103-220, gnl|monDom2|scaffold_139 (1979187-1979682) |
|
103-220, gnl|panTro1|chr20 (37932444-37932837) |
|
103-220, gnl|rheMac2|chr19 (42390855-42391247) |
|
103-220, gnl|rn3|chr1 (85444388-85443992) |
| |
|
285-515, gnl|bosTau2|chr18 (41710991-41710754) |
|
285-515, gnl|canFam2|chr1 (119669504-119668902) |
|
285-515, gnl|hg17|chr19 (41087136-41087695) |
|
285-515, gnl|Hg17|chr19 (41087378-41087143) |
|
285-515, gnl|loxAfr1|scaffold_83337 (1787-2391) |
|
285-515, gnl|mm7|chr7 (27360801-27360230) |
|
285-515, gnl|Mm7|chr7 (27360541-27360784) |
|
285-515, gnl|oryCun1|scaffold_168460 (7862-7348) |
|
285-515, gnl|panTro1|chr20 (37929462-37930020) |
|
285-515, gnl|rheMac2|chr19 (42387633-42388199) |
|
285-515, gnl|rn3|chr1 (85447355-85446778) |
|
csp (1.93424) |
|
cly (1.08578) |
|
nlu (0.766724) |
|
cli (0.458435) |
|
cag (0.453583) |
|
lnt (0.426925) |
|
pty (0.285429) |
|
nmm (0.265604) |
|
jca (0.22792) |
|
fty (0.17584) |
|
ill (0.175593) |
|
ton (0.1755) |
|
pla (0.133672) |
|
cov (0.132153) |
|
eru (0.120048) |
|
med (0.116252) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
csp (1.93424) |
|
cly (1.08578) |
|
nlu (0.766724) |
|
cli (0.458435) |
|
cag (0.453583) |
|
lnt (0.426925) |
|
pty (0.285429) |
|
nmm (0.265604) |
|
jca (0.22792) |
|
fty (0.17584) |
|
ill (0.175593) |
|
ton (0.1755) |
|
pla (0.133672) |
|
cov (0.132153) |
|
eru (0.120048) |
|
med (0.116252) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
