Non-Coding RNA Search

Ss1.1-rcly36b_a7.5

Sequence:


               
               GGGCTATAGAGCCCCTGCCTCGGCAGCAGCTTCCGAAGATCCTCTTACCCCATCTGTACT
GTACGGCACTTCCCCAGCACAGCTGAGCACACCTTGCAGTGGGCCCGGGATGAGTTTGAG
GGACTTTTCCGTCTGTTTGCTGAGACCATCAACCGTCACCAACAGGCACTCACTCCTCCA
GCAGACTTGGATGGGCCACAAATGCTGAACCTGCTGCAAGTGGTGCTGGGTGTTCTGAGA
GAGCGTCCACAGACCTGGCGAGACTGCGTGGTGTGGGCCCTTGGCCACTGGCAACTACGC
TTCCATTATGGCATCGAACAGTTACTGAGGCACTTCCCACCTGATAAAGTGTTGGAGGAT
GGAACTCCTTTCTGGTCGGGTCCCAAACAATGTCCCCAGCCCTTGGAGTTTGATGCCAGC
CAAGACATGCACCTCCTCTTCGTGCTGGCTGCTGCCAACCTGTATGCCCAGATGCATGGG
CTGCCTGGCTCACAGGACCAGACTGCACTCAAAGACCTGCTGCAGTTGCTACCACTGCCT
GATCCCCAGTACTTGGCTCCCATTTTGGCCAGTGACTTGGAGCTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTATAGAGCCCCTGCCTCGGCAGCAGCTTCCGAAGATCCTCTTACCCCATCTGTACT
GTACGGCACTTCCCCAGCACAGCTGAGCACACCTTGCAGTGGGCCCGGGATGAGTTTGAG
GGACTTTTCCGTCTGTTTGCTGAGACCATCAACCGTCACCAACAGGCACTCACTCCTCCA
GCAGACTTGGATGGGCCACAAATGCTGAACCTGCTGCAAGTGGTGCTGGGTGTTCTGAGA
GAGCGTCCACAGACCTGGCGAGACTGCGTGGTGTGGGCCCTTGGCCACTGGCAACTACGC
TTCCATTATGGCATCGAACAGTTACTGAGGCACTTCCCACCTGATAAAGTGTTGGAGGAT
GGAACTCCTTTCTGGTCGGGTCCCAAACAATGTCCCCAGCCCTTGGAGTTTGATGCCAGC
CAAGACATGCACCTCCTCTTCGTGCTGGCTGCTGCCAACCTGTATGCCCAGATGCATGGG
CTGCCTGGCTCACAGGACCAGACTGCACTCAAAGACCTGCTGCAGTTGCTACCACTGCCT
GATCCCCAGTACTTGGCTCCCATTTTGGCCAGTGACTTGGAGCTGACT

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               150-351, gnl|bosTau2|chr22 (38152283-38152084)
               

               
               150-351, gnl|Hg17|chr3 (49822175-49821976)
               

               
               150-351, gnl|Mm7|chr9 (107711189-107711352)
               


               
               421-585, gnl|bosTau2|chr22 (38151685-38151521)
               

               
               421-585, gnl|Hg17|chr3 (49821599-49821435)
               

               
               421-585, gnl|Mm7|chr9 (107711684-107711833)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-351, gnl|bosTau2|chr22 (38152283-38152084)
               

               
               150-351, gnl|Hg17|chr3 (49822175-49821976)
               

               
               150-351, gnl|Mm7|chr9 (107711189-107711352)
               


               
               421-585, gnl|bosTau2|chr22 (38151685-38151521)
               

               
               421-585, gnl|Hg17|chr3 (49821599-49821435)
               

               
               421-585, gnl|Mm7|chr9 (107711684-107711833)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cly (0.120642)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)
               

               
               jca (0.11396)

	150-351, gnl\|bosTau2\|chr22 (38152283-38152084)
	150-351, gnl\|Hg17\|chr3 (49822175-49821976)
	150-351, gnl\|Mm7\|chr9 (107711189-107711352)

	421-585, gnl\|bosTau2\|chr22 (38151685-38151521)
	421-585, gnl\|Hg17\|chr3 (49821599-49821435)
	421-585, gnl\|Mm7\|chr9 (107711684-107711833)