Ss1.1-rcly37b_p24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTGGTATACGTGTTTGGGGATATGCTGAGCAACGTGGGTGCTGCAGAGAAGGTTTTCT ACTACCTGGACAGACAGCCAGATCTGCCTCCACCTGGGACATTGGCCCCTTCCACTCTGA AGGGGGTGGTGAAATTCCAAGGCGTCTCCTTTGCATATCCTAACTGCCCTGACCAGCCTG TGCTCAAGGGTCTCACATTCACCCTACATCCTGGTCAGATGACCGCTCTGGTGGGGCCCA ATGGGTCTGGGAAGAGCACCGTGGCTGCCCTGCTGCAGAACCTGTACCAGCCCACCGAGG GGCAGGTGCTGCTGGACGAGGAGCCCGTCTCCGCCTATGAGCATCACTACCTGCACCAAC AGGTGGTTTTGGTCGGGCAGGAGCCTGTGCTGTTCTCGGGGTCTGTGAGGGACAACATTG CTTATGGGCTGAAGAGCTGCAGCGATGAGAAGGTGATGGCCGCTGCCCGGGCTGCCAGGG CAGAGGAGTTCATAAACGAAATGGAGCACGGACTCTACACAGATGTGGGGGAGAAAGGGA ACCAGCTGGCTGTGGGACAGAAGCAGCGTCTGGCCATTGCCCGGGCCCTCGTGCGGGACC CACGAGTCCTCATCCTGGACGAGGCCACCAGTGCCCTGGACGCGGAGAGCGAGCAGGCGC TGCAGGACTGGAAATCCCACGGGAACCGGACGGTGCTGGTGATCGCGCACAGGCTGCATA CGGTTCAGAACGCGGACCAGATCCTGGTGCTCAAGCAGGGAGAGCTGCAGGAGCATGCGC AGCTCATGGAGGGGGAGGACCTCTACTCCTACCTGGTGCGGCAGAACCAGAGGCCGGAGG GGGGCACCCCAGAGACACTGCCCTCTTCCCAGGGCCATCTCAGTGACCCAGAGGAGCTCC TGCTTTGACTTTCCCCGGGAGCTGCTTTTGGAGCTGGAGGCACGATGGAGGTTTAGACGG AGGATACTTTTGTTAGCGCACGGGGAGTGGGGGTGGGGAGGTTGCTGTCTCTATCCAAGA AACTCATTTACTTGATGAACAGAACTTTGGTGCTGAGAAGTGTATTGTGGCATAACAAAT ATATTTTAAAATATTTTTTGCTTATTATATAAATAGCACACATTCATATGGAAAATTTAG ACAGTATAGACAAGTTGGAAGAAGAAAAGTAAAACTAGCCGCTATTTCACATCCCAGAGG TAAAGATGGTTACCATTTTGCTGGCTGTCTTCCTGTCTTCATTGTTCTTTGAGATACATA TTAACTAGTATGACTTAAATATTCATGAGATTGCCTTTCTGTATCCTTTCCCATTCCCAT CAGGGTCTGAGGTTTGGGGGGGAGTTAGGGTATGGAGGGCTGGAGCGCAGTTCCCTAATT AACAGTATTAGTAGAACATAGATAATAGCTGGTTTATAGAGTTTTAATATGAGTAGGAAC TATGCTAAGCAGTTTGTCATATATTATCATTTTTAATCCTTATTCTCATCATATATTTGA GGTTAGTTGTCATCCCCATTTTATGGATGAGAAAACTGAATCTCTAAGAGATTAAATCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTGGTATACGTGTTTGGGGATATGCTGAGCAACGTGGGTGCTGCAGAGAAGGTTTTCT ACTACCTGGACAGACAGCCAGATCTGCCTCCACCTGGGACATTGGCCCCTTCCACTCTGA AGGGGGTGGTGAAATTCCAAGGCGTCTCCTTTGCATATCCTAACTGCCCTGACCAGCCTG TGCTCAAGGGTCTCACATTCACCCTACATCCTGGTCAGATGACCGCTCTGGTGGGGCCCA ATGGGTCTGGGAAGAGCACCGTGGCTGCCCTGCTGCAGAACCTGTACCAGCCCACCGAGG GGCAGGTGCTGCTGGACGAGGAGCCCGTCTCCGCCTATGAGCATCACTACCTGCACCAAC AGGTGGTTTTGGTCGGGCAGGAGCCTGTGCTGTTCTCGGGGTCTGTGAGGGACAACATTG CTTATGGGCTGAAGAGCTGCAGCGATGAGAAGGTGATGGCCGCTGCCCGGGCTGCCAGGG CAGAGGAGTTCATAAACGAAATGGAGCACGGACTCTACACAGATGTGGGGGAGAAAGGGA ACCAGCTGGCTGTGGGACAGAAGCAGCGTCTGGCCATTGCCCGGGCCCTCGTGCGGGACC CACGAGTCCTCATCCTGGACGAGGCCACCAGTGCCCTGGACGCGGAGAGCGAGCAGGCGC TGCAGGACTGGAAATCCCACGGGAACCGGACGGTGCTGGTGATCGCGCACAGGCTGCATA CGGTTCAGAACGCGGACCAGATCCTGGTGCTCAAGCAGGGAGAGCTGCAGGAGCATGCGC AGCTCATGGAGGGGGAGGACCTCTACTCCTACCTGGTGCGGCAGAACCAGAGGCCGGAGG GGGGCACCCCAGAGACACTGCCCTCTTCCCAGGGCCATCTCAGTGACCCAGAGGAGCTCC TGCTTTGACTTTCCCCGGGAGCTGCTTTTGGAGCTGGAGGCACGATGGAGGTTTAGACGG AGGATACTTTTGTTAGCGCACGGGGAGTGGGGGTGGGGAGGTTGCTGTCTCTATCCAAGA AACTCATTTACTTGATGAACAGAACTTTGGTGCTGAGAAGTGTATTGTGGCATAACAAAT ATATTTTAAAATATTTTTTGCTTATTATATAAATAGCACACATTCATATGGAAAATTTAG ACAGTATAGACAAGTTGGAAGAAGAAAAGTAAAACTAGCCGCTATTTCACATCCCAGAGG TAAAGATGGTTACCATTTTGCTGGCTGTCTTCCTGTCTTCATTGTTCTTTGAGATACATA TTAACTAGTATGACTTAAATATTCATGAGATTGCCTTTCTGTATCCTTTCCCATTCCCAT CAGGGTCTGAGGTTTGGGGGGGAGTTAGGGTATGGAGGGCTGGAGCGCAGTTCCCTAATT AACAGTATTAGTAGAACATAGATAATAGCTGGTTTATAGAGTTTTAATATGAGTAGGAAC TATGCTAAGCAGTTTGTCATATATTATCATTTTTAATCCTTATTCTCATCATATATTTGA GGTTAGTTGTCATCCCCATTTTATGGATGAGAAAACTGAATCTCTAAGAGATTAAATCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 779-898, - strand, RNAz p=0.559763 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 779-898, - strand, RNAz p=0.559763 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 181-366, gnl|bosTau2|chr23 (5512689-5512504) | |
| 181-366, gnl|canFam2|chr12 (5413273-5413437) | |
| 181-366, gnl|danRer3|chr19 (1949781-1949617) | |
| 181-366, gnl|dasNov1|scaffold_66779 (4520-4686) | |
| 181-366, gnl|echTel1|scaffold_276379 (28534-28370) | |
| 181-366, gnl|fr1|chrUn (207727380-207727216) | |
| 181-366, gnl|galGal2|chr16 (206240-206077) | |
| 181-366, gnl|hg17|chr6 (32906011-32906175) | |
| 181-366, gnl|Hg17|chr6 (32906203-32906018) | |
| 181-366, gnl|loxAfr1|scaffold_80907 (9354-9518) | |
| 181-366, gnl|mm7|chr17 (32294414-32294250) | |
| 181-366, gnl|monDom2|scaffold_42 (15980647-15980483) | |
| 181-366, gnl|oryCun1|scaffold_197733 (788-631) | |
| 181-366, gnl|panTro1|chr5 (33346321-33346485) | |
| 181-366, gnl|rheMac2|chr4 (32526118-32526282) | |
| 181-366, gnl|rn3|chr20 (4772816-4772980) | |
| 181-366, gnl|tetNig1|chrUn_random (10572672-10572828) | |
| 514-658, gnl|bosTau2|chr23 (5511966-5511822) | |
| 514-658, gnl|Hg17|chr6 (32905300-32905156) | |
| 528-653, gnl|bosTau2|chr17 (27406964-27406839) | |
| 528-653, gnl|canFam2|chr26 (9581883-9581712) | |
| 528-653, gnl|danRer3|chr19 (1951900-1951737) | |
| 528-653, gnl|dasNov1|scaffold_64348 (680-499) | |
| 528-653, gnl|echTel1|scaffold_276379 (29361-29208) | |
| 528-653, gnl|fr1|chrUn (207728057-207727877) | |
| 528-653, gnl|galGal2|chr15 (5185702-5185535) | |
| 528-653, gnl|hg17|chr12 (121941606-121941777) | |
| 528-653, gnl|Hg17|chr12 (121941750-121941625) | |
| 528-653, gnl|loxAfr1|scaffold_4238 (85341-85506) | |
| 528-653, gnl|mm7|chr5 (123317548-123317714) | |
| 528-653, gnl|Mm7|chr5 (123317687-123317562) | |
| 528-653, gnl|monDom2|scaffold_97 (3326584-3326731) | |
| 528-653, gnl|oryCun1|scaffold_109919 (2035-1869) | |
| 528-653, gnl|panTro1|chr10 (125022053-125022224) | |
| 528-653, gnl|rheMac2|chr11 (124201184-124201355) | |
| 528-653, gnl|rn3|chr12 (33510221-33510055) | |
| 528-653, gnl|tetNig1|chr12 (12166155-12166309) | |
| 528-653, gnl|xenTro1|scaffold_100 (1788395-1788548) | |
| 659-1030, gnl|bosTau2|chr23 (5511596-5511222) | |
| 659-1030, gnl|Hg17|chr6 (32904790-32904406) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 181-366, gnl|bosTau2|chr23 (5512689-5512504) | |
| 181-366, gnl|canFam2|chr12 (5413273-5413437) | |
| 181-366, gnl|danRer3|chr19 (1949781-1949617) | |
| 181-366, gnl|dasNov1|scaffold_66779 (4520-4686) | |
| 181-366, gnl|echTel1|scaffold_276379 (28534-28370) | |
| 181-366, gnl|fr1|chrUn (207727380-207727216) | |
| 181-366, gnl|galGal2|chr16 (206240-206077) | |
| 181-366, gnl|hg17|chr6 (32906011-32906175) | |
| 181-366, gnl|Hg17|chr6 (32906203-32906018) | |
| 181-366, gnl|loxAfr1|scaffold_80907 (9354-9518) | |
| 181-366, gnl|mm7|chr17 (32294414-32294250) | |
| 181-366, gnl|monDom2|scaffold_42 (15980647-15980483) | |
| 181-366, gnl|oryCun1|scaffold_197733 (788-631) | |
| 181-366, gnl|panTro1|chr5 (33346321-33346485) | |
| 181-366, gnl|rheMac2|chr4 (32526118-32526282) | |
| 181-366, gnl|rn3|chr20 (4772816-4772980) | |
| 181-366, gnl|tetNig1|chrUn_random (10572672-10572828) | |
| 514-658, gnl|bosTau2|chr23 (5511966-5511822) | |
| 514-658, gnl|Hg17|chr6 (32905300-32905156) | |
| 528-653, gnl|bosTau2|chr17 (27406964-27406839) | |
| 528-653, gnl|canFam2|chr26 (9581883-9581712) | |
| 528-653, gnl|danRer3|chr19 (1951900-1951737) | |
| 528-653, gnl|dasNov1|scaffold_64348 (680-499) | |
| 528-653, gnl|echTel1|scaffold_276379 (29361-29208) | |
| 528-653, gnl|fr1|chrUn (207728057-207727877) | |
| 528-653, gnl|galGal2|chr15 (5185702-5185535) | |
| 528-653, gnl|hg17|chr12 (121941606-121941777) | |
| 528-653, gnl|Hg17|chr12 (121941750-121941625) | |
| 528-653, gnl|loxAfr1|scaffold_4238 (85341-85506) | |
| 528-653, gnl|mm7|chr5 (123317548-123317714) | |
| 528-653, gnl|Mm7|chr5 (123317687-123317562) | |
| 528-653, gnl|monDom2|scaffold_97 (3326584-3326731) | |
| 528-653, gnl|oryCun1|scaffold_109919 (2035-1869) | |
| 528-653, gnl|panTro1|chr10 (125022053-125022224) | |
| 528-653, gnl|rheMac2|chr11 (124201184-124201355) | |
| 528-653, gnl|rn3|chr12 (33510221-33510055) | |
| 528-653, gnl|tetNig1|chr12 (12166155-12166309) | |
| 528-653, gnl|xenTro1|scaffold_100 (1788395-1788548) | |
| 659-1030, gnl|bosTau2|chr23 (5511596-5511222) | |
| 659-1030, gnl|Hg17|chr6 (32904790-32904406) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cje (0.660939) | |
| clu (0.598229) | |
| cbe (0.239234) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| rec (0.17307) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| fat (0.147427) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| che (0.136314) | |
| sug (0.127291) | |
| cly (0.120642) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.660939) | |
| clu (0.598229) | |
| cbe (0.239234) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| rec (0.17307) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| fat (0.147427) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| che (0.136314) | |
| sug (0.127291) | |
| cly (0.120642) |