Non-Coding RNA Search

Ss1.1-rcmu17_b13.5

Sequence:


               
               TTTTTTATTTCAAATAATTCTGTTCTGCTGCAGGGTTATCAGCTCTTTGAAGAAGTCAAA
AGCTGCAGTAAACTTTTTCAACGTTGGCTGCAGTAAATCTTTTCAATAAAACCTGTCTGG
ATGTCTCAAGTTGTGTTGGGAAATTTTTCATATTAGAAGCTTTCAAATTAAATTGCATTG
TCTCCAAACTCTGTAATCATGAAAATCTGTTGACTTATAGAGTAACTTGTATTAAATTCT
CCCTACATTATGAGCCATTTCTTCCTACTATGTACCTACTTCATGGATGCATTTTGAACT
TTAATATAGGAAGGGGAAGAAGAAGGAGATGAGGAAAATGATCCAGACTATGACCCAAAG
GTGAGCAAATTAGTGCTGTTTTCTATTAAATTTAAGGCAGGTTAAATATGAGTTGGTGAT
TCTGAATATAAAGTTAAATATAAAATTTATTTTTGTCTGTTAAAAGTCTTTAATAAATCT
CTCCTCACTGGCATTTCAACAGTACATGTAATTTCAGTGCACCTTTCCTAAGAAATTTTA
TTTTGGATTCTGACAAATTTTCAGAGCTTCAGGTAAATAACCCTAGGTTTATTTTAATGA
CACATTATCTTGGACCTTTCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTATTTCAAATAATTCTGTTCTGCTGCAGGGTTATCAGCTCTTTGAAGAAGTCAAA
AGCTGCAGTAAACTTTTTCAACGTTGGCTGCAGTAAATCTTTTCAATAAAACCTGTCTGG
ATGTCTCAAGTTGTGTTGGGAAATTTTTCATATTAGAAGCTTTCAAATTAAATTGCATTG
TCTCCAAACTCTGTAATCATGAAAATCTGTTGACTTATAGAGTAACTTGTATTAAATTCT
CCCTACATTATGAGCCATTTCTTCCTACTATGTACCTACTTCATGGATGCATTTTGAACT
TTAATATAGGAAGGGGAAGAAGAAGGAGATGAGGAAAATGATCCAGACTATGACCCAAAG
GTGAGCAAATTAGTGCTGTTTTCTATTAAATTTAAGGCAGGTTAAATATGAGTTGGTGAT
TCTGAATATAAAGTTAAATATAAAATTTATTTTTGTCTGTTAAAAGTCTTTAATAAATCT
CTCCTCACTGGCATTTCAACAGTACATGTAATTTCAGTGCACCTTTCCTAAGAAATTTTA
TTTTGGATTCTGACAAATTTTCAGAGCTTCAGGTAAATAACCCTAGGTTTATTTTAATGA
CACATTATCTTGGACCTTTCTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-120, + strand, RNAz p=0.606781

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, + strand, RNAz p=0.606781

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-619, gnl|bosTau2|chr5 (1979585-1978974)
               

               
               1-619, gnl|Hg17|chr12 (74729605-74728965)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-619, gnl|bosTau2|chr5 (1979585-1978974)
               

               
               1-619, gnl|Hg17|chr12 (74729605-74728965)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cmu (0.186393)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)

	1-619, gnl\|bosTau2\|chr5 (1979585-1978974)
	1-619, gnl\|Hg17\|chr12 (74729605-74728965)