Non-Coding RNA Search

Ss1.1-rcmu21_h24.5

Sequence:


               
               GCAGGGCCTCCACCCCTTAGCTCTCCACCCTGCCTTGCTCCGCACCTGGGCTCCCCGCCC
TGCCCCCCGAGGGTGCTGCTCACCTCTGCCCCTCACCTGCCGCTCCCTCCATGCCCACCT
TGAGGGCTCGGCCTCTAAGTGGGGCTCTTGGGTTCTTACTCCTTTCCCCAACCTGGGCCT
GTCTGGCAGCCCAGTTGCTGGAGTCTCCTTGGACCTGGTGACCTGGGAGCTGCCAAGCTT
GCCCTGCTCCGCTCCCCGGGCCCCCGGCTCGGGGCTGAGGCACAGCTTTTGGGACAGTGC
AGGCCATCTCTGATCCTGCCCTGCCAGGCGTGGATGGCAGGGGCTCCTGTCTGCAGAGGG
GGAGCCAGGAGTGTGCCGTGAGGTTGGCTGATGTCATGATCCACAGCCAAGGGATGATTC
CACTGCCATCAGAGCCCCCGAAGACTGCAGGGGTCATGGTCTTCCCTGAGAGGCCTCAGG
AGGAAGGGAGTTTACTTGGGGACATGTAAAAAATCGTGCTGTGCTCCAGGCGCTTCTTTC
AGTCAGCGCAGGGGAGTGTGTTGCAATGATTGACATTCGCGTGGGGCCAACTTGGGTGTG
AGGGAGGTTTTAACCCAGACACAAGGTTAGTTTCAAAGACTAGTTAATAAATCTATTTTT
CTTTATTTTCTTTTTTTGCACAGAAGCTGGTAATCTAGGACCTACGTGTGAACAACTTTA
TATATGAATATTTTTTGTACTTGGTTTACTTGGGTTGGTATGATAACATTATATTTAAGT
TCCTTGAACACTGTGGATCCCCCTAATGTGTATGAATGACTGAGGCTTTGTAAATTAAGG
GACGTTTGTGTGAATAAAGTTATTTGATGGGGTCAAAGAAGCCATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGGCCTCCACCCCTTAGCTCTCCACCCTGCCTTGCTCCGCACCTGGGCTCCCCGCCC
TGCCCCCCGAGGGTGCTGCTCACCTCTGCCCCTCACCTGCCGCTCCCTCCATGCCCACCT
TGAGGGCTCGGCCTCTAAGTGGGGCTCTTGGGTTCTTACTCCTTTCCCCAACCTGGGCCT
GTCTGGCAGCCCAGTTGCTGGAGTCTCCTTGGACCTGGTGACCTGGGAGCTGCCAAGCTT
GCCCTGCTCCGCTCCCCGGGCCCCCGGCTCGGGGCTGAGGCACAGCTTTTGGGACAGTGC
AGGCCATCTCTGATCCTGCCCTGCCAGGCGTGGATGGCAGGGGCTCCTGTCTGCAGAGGG
GGAGCCAGGAGTGTGCCGTGAGGTTGGCTGATGTCATGATCCACAGCCAAGGGATGATTC
CACTGCCATCAGAGCCCCCGAAGACTGCAGGGGTCATGGTCTTCCCTGAGAGGCCTCAGG
AGGAAGGGAGTTTACTTGGGGACATGTAAAAAATCGTGCTGTGCTCCAGGCGCTTCTTTC
AGTCAGCGCAGGGGAGTGTGTTGCAATGATTGACATTCGCGTGGGGCCAACTTGGGTGTG
AGGGAGGTTTTAACCCAGACACAAGGTTAGTTTCAAAGACTAGTTAATAAATCTATTTTT
CTTTATTTTCTTTTTTTGCACAGAAGCTGGTAATCTAGGACCTACGTGTGAACAACTTTA
TATATGAATATTTTTTGTACTTGGTTTACTTGGGTTGGTATGATAACATTATATTTAAGT
TCCTTGAACACTGTGGATCCCCCTAATGTGTATGAATGACTGAGGCTTTGTAAATTAAGG
GACGTTTGTGTGAATAAAGTTATTTGATGGGGTCAAAGAAGCCATATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               355-456, - strand, RNAz p=0.51457

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               355-456, - strand, RNAz p=0.51457

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               355-847, gnl|bosTau2|chr2 (30774437-30774939)
               

               
               355-847, gnl|Hg17|chr20 (2076630-2077147)
               

               
               355-847, gnl|Mm7|chr2 (129572545-129573088)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               355-847, gnl|bosTau2|chr2 (30774437-30774939)
               

               
               355-847, gnl|Hg17|chr20 (2076630-2077147)
               

               
               355-847, gnl|Mm7|chr2 (129572545-129573088)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

	355-847, gnl\|bosTau2\|chr2 (30774437-30774939)
	355-847, gnl\|Hg17\|chr20 (2076630-2077147)
	355-847, gnl\|Mm7\|chr2 (129572545-129573088)

	fcc (0.197785)
	cmu (0.186393)
	sto (0.179824)
	fhi (0.169578)
	nmm (0.132802)
	ecc (0.115035)