Non-Coding RNA Search

Ss1.1-rcmu21_k23.5.5

Sequence:


               
               GTATATTTTTGAGAGAGATGCTACCTTGCCAATGATTTAATAAATAATTTTAAATTAACT
TACAAATTTATGGATACATACCAAAAGATTTTAAAAGAAAGAGAGAGAAGCAATCATCCT
TTATTTGTTCAGGTCTTAACTCTCCAGAATATTCTTCAGATCAAGAAATCTGTGTCCGTG
AAAGCTGATCCCATGTTAATTGGAGAGTAAATGTTATTCAGTACTTCTGAAATCATTTCT
AAAAAGTTAACATTCAAAAAAAAAGGGTTTTCTCCATAGCTTCTGAGGATAGCTTCATAC
ATCACAGTTTTAATACAAAGTATAAGCTCTACTTTATAACACGTTCTGCAAGTTTCTTTA
AAACTGTTATATTCCAGTTAAACTTCTCTGTCTGCAGTCTTTTGTTACCTCTGCAGGCTA
CCCCCCCCTTCATGTGCAGAGGCCACTTTGTTTGGTTTGTTTGATGCTAAAGCTATTGTC
GTGATGCTGTAACCCCAAAGGCAGATTATCTGTGTCATATCCTATGGCTCCTCACCGCGT
GTTTACCAGCTGTTTCTCTGTATTTGAAAAGTCAGATTCCTTCTGTTGAAGCTGTCTCTA
TAGCATTTTCTAAACAAAACAACAACAAAAAAGGTCTTTTCCTTGTCTGTAATGAGCTTG
TAAACCCATTTTCCGTGTGTGTTCTGGGGTGGGCATGGTTGAGTGTGTGTGGGGGCACTG
GTGTGCCAGTCTTTTTGTACCGTAACTACCTCATGGGTTGAGTGATGGTTGCACTGCTGG
TTGTGATAACAGAGCACATTTTGTTGGGTGACTGGTGTGTGTGATTTTTTTTTTTTCCTG
TTTGTTTTAGCTGGGGGTTGTTCATGAAACTGACAGATGTTTTTCTAAAAAGGACTATTA
TCAGTTTCCAAATACAATACTTCTCTCTTCTGGTTTTTCCTGAATGAGCCTGATTTTGTT
GCTGTTTTTCATCGTTGATGAGGGTAAAAAGAGTACCCTTAAAAATCCCTGTGGCCAGTT
TGAACTCCCCTCTCGTACGCTTTTCGCTGTTCAGTGTGTCGGCAATTTTGTGGCCATGCT
TAGATGTATAGTTTTGATAACCACAGTTTTAAGTCCTTTATCAAATGTGCATAATAAAAA
GATATATATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATATTTTTGAGAGAGATGCTACCTTGCCAATGATTTAATAAATAATTTTAAATTAACT
TACAAATTTATGGATACATACCAAAAGATTTTAAAAGAAAGAGAGAGAAGCAATCATCCT
TTATTTGTTCAGGTCTTAACTCTCCAGAATATTCTTCAGATCAAGAAATCTGTGTCCGTG
AAAGCTGATCCCATGTTAATTGGAGAGTAAATGTTATTCAGTACTTCTGAAATCATTTCT
AAAAAGTTAACATTCAAAAAAAAAGGGTTTTCTCCATAGCTTCTGAGGATAGCTTCATAC
ATCACAGTTTTAATACAAAGTATAAGCTCTACTTTATAACACGTTCTGCAAGTTTCTTTA
AAACTGTTATATTCCAGTTAAACTTCTCTGTCTGCAGTCTTTTGTTACCTCTGCAGGCTA
CCCCCCCCTTCATGTGCAGAGGCCACTTTGTTTGGTTTGTTTGATGCTAAAGCTATTGTC
GTGATGCTGTAACCCCAAAGGCAGATTATCTGTGTCATATCCTATGGCTCCTCACCGCGT
GTTTACCAGCTGTTTCTCTGTATTTGAAAAGTCAGATTCCTTCTGTTGAAGCTGTCTCTA
TAGCATTTTCTAAACAAAACAACAACAAAAAAGGTCTTTTCCTTGTCTGTAATGAGCTTG
TAAACCCATTTTCCGTGTGTGTTCTGGGGTGGGCATGGTTGAGTGTGTGTGGGGGCACTG
GTGTGCCAGTCTTTTTGTACCGTAACTACCTCATGGGTTGAGTGATGGTTGCACTGCTGG
TTGTGATAACAGAGCACATTTTGTTGGGTGACTGGTGTGTGTGATTTTTTTTTTTTCCTG
TTTGTTTTAGCTGGGGGTTGTTCATGAAACTGACAGATGTTTTTCTAAAAAGGACTATTA
TCAGTTTCCAAATACAATACTTCTCTCTTCTGGTTTTTCCTGAATGAGCCTGATTTTGTT
GCTGTTTTTCATCGTTGATGAGGGTAAAAAGAGTACCCTTAAAAATCCCTGTGGCCAGTT
TGAACTCCCCTCTCGTACGCTTTTCGCTGTTCAGTGTGTCGGCAATTTTGTGGCCATGCT
TAGATGTATAGTTTTGATAACCACAGTTTTAAGTCCTTTATCAAATGTGCATAATAAAAA
GATATATATCAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1152, gnl|bosTau2|chr3 (42002105-42003252)
               

               
               1-1152, gnl|Hg17|chr1 (91859083-91857928)
               

               
               1-1152, gnl|Mm7|chr5 (106285112-106284010)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1152, gnl|bosTau2|chr3 (42002105-42003252)
               

               
               1-1152, gnl|Hg17|chr1 (91859083-91857928)
               

               
               1-1152, gnl|Mm7|chr5 (106285112-106284010)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               csk (0.422238)
               

               
               hea (0.408998)
               

               
               fat (0.294855)
               

               
               mgp (0.230681)
               

               
               jca (0.22792)
               

               
               cmu (0.186393)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.422238)
               

               
               hea (0.408998)
               

               
               fat (0.294855)
               

               
               mgp (0.230681)
               

               
               jca (0.22792)
               

               
               cmu (0.186393)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	1-1152, gnl\|bosTau2\|chr3 (42002105-42003252)
	1-1152, gnl\|Hg17\|chr1 (91859083-91857928)
	1-1152, gnl\|Mm7\|chr5 (106285112-106284010)

	csk (0.422238)
	hea (0.408998)
	fat (0.294855)
	mgp (0.230681)
	jca (0.22792)
	cmu (0.186393)
	eli (0.151814)
	ski (0.146735)
	liv (0.146284)
	pty (0.142714)
	pla (0.133672)
	sug (0.127291)
	bla (0.124347)
	cly (0.120642)
	eru (0.120048)
	med (0.116252)
	cty (0.10408)