Ss1.1-rcmu22_c11.5
|
GGTGTGCCACAGGTGCACAGTGCCAAAGTGGATGCACCAACTGGGGGCCTGAAGGGGAGG
CCCAGCTGGCTCTGGGAGTGGGCTGGTTGTAATGAGAGGGGAGGGTGTCCTCCTCTGTTT
CCTGTCTCCTTCCTTTTCCTGTCATGGAATGGAGGTTTATGGAAACAGCTACACTCTCAA
CCAGGTGCTTTCAAAATCTCCAAAGTCTAAGCACTTTCAACCACCAAATTACAGACTGTC
AGGATAGGGAGGAACTTTTCTCCTCCCCACATCCTGCTTGCTTTTCTGGAGAGGGAGTTT
CTCCTGCAGGGCCCCCTGACCTCCGGTCCAGGGCCTAGGCCTGTTCTAGCTGCCACCCCT
CCAGGCTGTCCAAACCTTTTCCTTCCCAATCCACCAAGAAGACCTGGCTGGAGGTGCCCC
TCAGCCACACTTGCTCTGTGGCCTAAGCAATAACGCCTGCCCTGCCTACCACAGACAGTA
ACCTTTGGCCTTAGACTCTTGCCAGTTGAAAGCTGAGTGACAGCCCAAACCCAGTTAGGA
GAGGACCTGTGGCCAGCCTTGGCTCAAGGCACTGTGCCAGGCTCCCCTCGCTGGCATTTC
CAGGCTTGCCAGATACTAACCAATGCATCGCCAGTAACACTGCATGTTCATATAGTAAGT
TAAAGAGCAAAACAAGCCAACACGGATATGGGCAAACAAGCAAAGGGAGAAAAAAGGGCA
CATCAGGAGACAAGATGTGTAGCCAGTGAAGGTATGCTGGGAGTGTTGCAAGTTAAACTA
TTAAAAAAGATTAGGATTTAATTGCTTCTCATGTAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGTGTGCCACAGGTGCACAGTGCCAAAGTGGATGCACCAACTGGGGGCCTGAAGGGGAGG
CCCAGCTGGCTCTGGGAGTGGGCTGGTTGTAATGAGAGGGGAGGGTGTCCTCCTCTGTTT
CCTGTCTCCTTCCTTTTCCTGTCATGGAATGGAGGTTTATGGAAACAGCTACACTCTCAA
CCAGGTGCTTTCAAAATCTCCAAAGTCTAAGCACTTTCAACCACCAAATTACAGACTGTC
AGGATAGGGAGGAACTTTTCTCCTCCCCACATCCTGCTTGCTTTTCTGGAGAGGGAGTTT
CTCCTGCAGGGCCCCCTGACCTCCGGTCCAGGGCCTAGGCCTGTTCTAGCTGCCACCCCT
CCAGGCTGTCCAAACCTTTTCCTTCCCAATCCACCAAGAAGACCTGGCTGGAGGTGCCCC
TCAGCCACACTTGCTCTGTGGCCTAAGCAATAACGCCTGCCCTGCCTACCACAGACAGTA
ACCTTTGGCCTTAGACTCTTGCCAGTTGAAAGCTGAGTGACAGCCCAAACCCAGTTAGGA
GAGGACCTGTGGCCAGCCTTGGCTCAAGGCACTGTGCCAGGCTCCCCTCGCTGGCATTTC
CAGGCTTGCCAGATACTAACCAATGCATCGCCAGTAACACTGCATGTTCATATAGTAAGT
TAAAGAGCAAAACAAGCCAACACGGATATGGGCAAACAAGCAAAGGGAGAAAAAAGGGCA
CATCAGGAGACAAGATGTGTAGCCAGTGAAGGTATGCTGGGAGTGTTGCAAGTTAAACTA
TTAAAAAAGATTAGGATTTAATTGCTTCTCATGTAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-213, 25057 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW345355.1|), blast
E-value=1.96182e-44, identity=87.17% |
|
139-213, 27403 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW346164.1|),
blast E-value=6e-17, identity=90% |
|
139-213, 456149 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI542028.1|),
blast E-value=6e-17, identity=90% |
|
1-213, BovGen_11875 normal cattle brain Bos taurus cDNA clone (gb|CO883550.1|),
blast E-value=1.96182e-44, identity=87.17% |
|
1-213, LB02219.CR_O16 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE240663.1|),
blast E-value=1.96182e-44, identity=87.17% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
1-213, 25057 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW345355.1|), blast
E-value=1.96182e-44, identity=87.17% |
|
139-213, 27403 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW346164.1|),
blast E-value=6e-17, identity=90% |
|
139-213, 456149 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI542028.1|),
blast E-value=6e-17, identity=90% |
|
1-213, BovGen_11875 normal cattle brain Bos taurus cDNA clone (gb|CO883550.1|),
blast E-value=1.96182e-44, identity=87.17% |
|
1-213, LB02219.CR_O16 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE240663.1|),
blast E-value=1.96182e-44, identity=87.17% |
|
1-216, gnl|bosTau2|chr29 (27199663-27199890) |
|
1-216, gnl|canFam2|chr5 (4330140-4329666) |
|
1-216, gnl|dasNov1|scaffold_27500 (558-1030) |
|
1-216, gnl|echTel1|scaffold_293431 (2315-2789) |
|
1-216, gnl|hg17|chr11 (133272015-133272508) |
|
1-216, gnl|Hg17|chr11 (133272463-133272212) |
|
1-216, gnl|mm7|chr9 (27239156-27238706) |
|
1-216, gnl|Mm7|chr9 (27238742-27238976) |
|
1-216, gnl|monDom2|scaffold_15 (24517535-24518037) |
|
1-216, gnl|oryCun1|scaffold_171870 (4649-4192) |
|
1-216, gnl|panTro1|chr9 (135493489-135493982) |
|
1-216, gnl|rheMac2|chr14 (131891683-131892211) |
|
1-216, gnl|rn3|chr8 (26963085-26962628) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-216, gnl|bosTau2|chr29 (27199663-27199890) |
|
1-216, gnl|canFam2|chr5 (4330140-4329666) |
|
1-216, gnl|dasNov1|scaffold_27500 (558-1030) |
|
1-216, gnl|echTel1|scaffold_293431 (2315-2789) |
|
1-216, gnl|hg17|chr11 (133272015-133272508) |
|
1-216, gnl|Hg17|chr11 (133272463-133272212) |
|
1-216, gnl|mm7|chr9 (27239156-27238706) |
|
1-216, gnl|Mm7|chr9 (27238742-27238976) |
|
1-216, gnl|monDom2|scaffold_15 (24517535-24518037) |
|
1-216, gnl|oryCun1|scaffold_171870 (4649-4192) |
|
1-216, gnl|panTro1|chr9 (135493489-135493982) |
|
1-216, gnl|rheMac2|chr14 (131891683-131892211) |
|
1-216, gnl|rn3|chr8 (26963085-26962628) |
|
cmu (0.372787) |
|
cte (0.29274) |
|
cst (0.140036) |
|
che (0.136314) |
|
cmu (0.372787) |
|
cte (0.29274) |
|
cst (0.140036) |
|
che (0.136314) |
