Non-Coding RNA Search

Ss1.1-rcmu25_d16.5

Sequence:


               
               GAGGTATGTTTTTAAAGCTTTTATTTTTTAAGTTGATGAAATTTCGGCCACTTTACATTT
AAATTCTGGGGAGACTTTTGGCTGAATGCGTCCGTAACTGATGAATGTGAATTTTCAGAT
TTGATTTCATTCTCTACACCCGTTCCCTTTGCGGTGTTTCCTGCTGCAGCGAGTGGTTAG
AAGGCTTATTCAGATTCTGACACTTGGCTTTTTGCTCACGGTTCTTTCCAGTTTCATCTG
CTCTTTGGTTCTTAATTTCTCTCCTTCAGCCTTAAAATAGAAAGAAGCTTCTCGGTGGTT
GGCGTCCTCTTCCTGCCTGGCTGGAGATGGTTACCAGTTCCCTCGGGTACGTCCAGTCTC
CTTGCAAAAGTCTCCGGCCATCTCACCTCCAGAATGTCTTTTTCAAATTGCCTGTGAAAG
TATTAACCTACTTACTTTCCGGCCATGAGACGGAAGTTAGGTGAGGGAGGGAGAGCGGAG
CCTCGGAAGTGACATTTCAGCCCAGAGCTAAGAGAGTCCCGCCTGACGGTGGGTGGTGTG
TACTTGCCTTAAACGAACCGCAAAGCAAGTAATTGAAGCATTTTGCTTAGTTTTGAAAAT
CTTACTCGCAGCTGCACGTTGATATAAATTAGGAAGCCGTCGTTTCCCCCGGCGGCCCGG
ACATCTGGGTTCCTGACCCGCTCGCCACCCCCCACACAGCAAGCCGAGTGGGAGCCTTCC
ATCCTGCTTTCCCCCCATGCACCGCACGCATATCCGCTGCCTGAGGGGACCCTGCCTCCA
GGGGTGAAGCTCCTCCCTTTCAGGAAGTGCGGGCCCCGCCTTTAGGATGGGTGGCCGCCA
GCAGCTCCTGGACCACCTGTCCAGCATCCAGAGCTGGGAGATGAGACCCTCTCTTGGCAA
CTCCTGTTAGAGCCCAGGTCAGCCCACTCCTGTGCGCCTGACTGGATGGGGTGAACGCAG
ACCAAAGGACCCCTGGGGCCCCCGAGACTGCGGGTGGCCAGAAGTGCCAGCCTCTGCAGC
AGCAGGTTTCTACAAGCGTAGTTTAGCCTGGCGAGATTGTGCAGCTTGACCTGGAGAAAT
GCCTGGCACACGCCATGTAACTCTTCTTGAATTGATGGGCATCGCACGTTCAGGGCCACC
TGAGGGAAGTCTCGGCCTTTTCCTTTAAAACCACTACGCTCATCTGTTTTGCACTGACTA
TCAATAACTTAATACACCCACTCCCACTTATCTTTAAATGAATGGTATTTATTTGACAGC
TCGGTGTAACAGCTTGCTATGCACTTTCTTTTGGAAGTTTCCCATCTGAAACTTGGAAAA
CAGGAAAAATGTCAGCTGACAGATGTATTCATTTTTTTTTTTTGTTAAAGTTAGCGGGTA
GGTGAATGGGGCTAAGACTCATTCTGATACTGTGTGTAAACAAGCTTTAAGGAAGATGTG
CCAGAGCGTTCAAGTCTGATTCTACTTTTGCAGAAAAAAATCTAAAGATCAGTTTATAGA
GCTTTATTTTTTACCTTATCGAAATATACAGAATTTTAATATGCATATGTTGTCTCCGAC
TTAAAATTAGAATGTATGTCTGCATTGCTGTTTAACATGTCCACTCATCGTGTAGTGATG
TAATAGCAGAGCCTCCTCAGACATGGGCTTAACACAGATGGAACCTGTAGTTGTTGTCGT
CATAAATACTGGACTTTATTTTTAAATTATTGAATATAGTAGGTGCGTTCAAGACTATAA
ATCAGCCTCCAAACCATAATGTTTAATTGCAAATAAATCATTAACCTGCTCTGAAACATT
AAATTGGGATTAAACCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGTATGTTTTTAAAGCTTTTATTTTTTAAGTTGATGAAATTTCGGCCACTTTACATTT
AAATTCTGGGGAGACTTTTGGCTGAATGCGTCCGTAACTGATGAATGTGAATTTTCAGAT
TTGATTTCATTCTCTACACCCGTTCCCTTTGCGGTGTTTCCTGCTGCAGCGAGTGGTTAG
AAGGCTTATTCAGATTCTGACACTTGGCTTTTTGCTCACGGTTCTTTCCAGTTTCATCTG
CTCTTTGGTTCTTAATTTCTCTCCTTCAGCCTTAAAATAGAAAGAAGCTTCTCGGTGGTT
GGCGTCCTCTTCCTGCCTGGCTGGAGATGGTTACCAGTTCCCTCGGGTACGTCCAGTCTC
CTTGCAAAAGTCTCCGGCCATCTCACCTCCAGAATGTCTTTTTCAAATTGCCTGTGAAAG
TATTAACCTACTTACTTTCCGGCCATGAGACGGAAGTTAGGTGAGGGAGGGAGAGCGGAG
CCTCGGAAGTGACATTTCAGCCCAGAGCTAAGAGAGTCCCGCCTGACGGTGGGTGGTGTG
TACTTGCCTTAAACGAACCGCAAAGCAAGTAATTGAAGCATTTTGCTTAGTTTTGAAAAT
CTTACTCGCAGCTGCACGTTGATATAAATTAGGAAGCCGTCGTTTCCCCCGGCGGCCCGG
ACATCTGGGTTCCTGACCCGCTCGCCACCCCCCACACAGCAAGCCGAGTGGGAGCCTTCC
ATCCTGCTTTCCCCCCATGCACCGCACGCATATCCGCTGCCTGAGGGGACCCTGCCTCCA
GGGGTGAAGCTCCTCCCTTTCAGGAAGTGCGGGCCCCGCCTTTAGGATGGGTGGCCGCCA
GCAGCTCCTGGACCACCTGTCCAGCATCCAGAGCTGGGAGATGAGACCCTCTCTTGGCAA
CTCCTGTTAGAGCCCAGGTCAGCCCACTCCTGTGCGCCTGACTGGATGGGGTGAACGCAG
ACCAAAGGACCCCTGGGGCCCCCGAGACTGCGGGTGGCCAGAAGTGCCAGCCTCTGCAGC
AGCAGGTTTCTACAAGCGTAGTTTAGCCTGGCGAGATTGTGCAGCTTGACCTGGAGAAAT
GCCTGGCACACGCCATGTAACTCTTCTTGAATTGATGGGCATCGCACGTTCAGGGCCACC
TGAGGGAAGTCTCGGCCTTTTCCTTTAAAACCACTACGCTCATCTGTTTTGCACTGACTA
TCAATAACTTAATACACCCACTCCCACTTATCTTTAAATGAATGGTATTTATTTGACAGC
TCGGTGTAACAGCTTGCTATGCACTTTCTTTTGGAAGTTTCCCATCTGAAACTTGGAAAA
CAGGAAAAATGTCAGCTGACAGATGTATTCATTTTTTTTTTTTGTTAAAGTTAGCGGGTA
GGTGAATGGGGCTAAGACTCATTCTGATACTGTGTGTAAACAAGCTTTAAGGAAGATGTG
CCAGAGCGTTCAAGTCTGATTCTACTTTTGCAGAAAAAAATCTAAAGATCAGTTTATAGA
GCTTTATTTTTTACCTTATCGAAATATACAGAATTTTAATATGCATATGTTGTCTCCGAC
TTAAAATTAGAATGTATGTCTGCATTGCTGTTTAACATGTCCACTCATCGTGTAGTGATG
TAATAGCAGAGCCTCCTCAGACATGGGCTTAACACAGATGGAACCTGTAGTTGTTGTCGT
CATAAATACTGGACTTTATTTTTAAATTATTGAATATAGTAGGTGCGTTCAAGACTATAA
ATCAGCCTCCAAACCATAATGTTTAATTGCAAATAAATCATTAACCTGCTCTGAAACATT
AAATTGGGATTAAACCAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               4-617, gnl|bosTau2|chr12 (46950869-46950236)
               

               
               4-617, gnl|Hg17|chr13 (112586339-112586996)
               

               
               4-617, gnl|Mm7|chr8 (12841013-12841618)
               


               
               873-1819, gnl|bosTau2|chr12 (46950127-46949192)
               

               
               873-1819, gnl|Hg17|chr13 (112588408-112589303)
               

               
               873-1819, gnl|Mm7|chr8 (12841971-12842939)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-617, gnl|bosTau2|chr12 (46950869-46950236)
               

               
               4-617, gnl|Hg17|chr13 (112586339-112586996)
               

               
               4-617, gnl|Mm7|chr8 (12841013-12841618)
               


               
               873-1819, gnl|bosTau2|chr12 (46950127-46949192)
               

               
               873-1819, gnl|Hg17|chr13 (112588408-112589303)
               

               
               873-1819, gnl|Mm7|chr8 (12841971-12842939)

Expressed library(ies): 30 entry(ies)

More info

Expressed library(ies): 30 entry(ies)

Help | Less info


               
               lin (0.582411)
               

               
               rec (0.519211)
               

               
               tra (0.492368)
               

               
               liv (0.438853)
               

               
               ret (0.3862)
               

               
               sug (0.381874)
               

               
               tbr (0.308356)
               

               
               cga (0.279096)
               

               
               lyg (0.266205)
               

               
               nmm (0.265604)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.582411)
               

               
               rec (0.519211)
               

               
               tra (0.492368)
               

               
               liv (0.438853)
               

               
               ret (0.3862)
               

               
               sug (0.381874)
               

               
               tbr (0.308356)
               

               
               cga (0.279096)
               

               
               lyg (0.266205)
               

               
               nmm (0.265604)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	4-617, gnl\|bosTau2\|chr12 (46950869-46950236)
	4-617, gnl\|Hg17\|chr13 (112586339-112586996)
	4-617, gnl\|Mm7\|chr8 (12841013-12841618)

	873-1819, gnl\|bosTau2\|chr12 (46950127-46949192)
	873-1819, gnl\|Hg17\|chr13 (112588408-112589303)
	873-1819, gnl\|Mm7\|chr8 (12841971-12842939)

	lin (0.582411)
	rec (0.519211)
	tra (0.492368)
	liv (0.438853)
	ret (0.3862)
	sug (0.381874)
	tbr (0.308356)
	cga (0.279096)
	lyg (0.266205)
	nmm (0.265604)
	kid (0.259471)
	mgp (0.230681)
	tes (0.207814)
	jej (0.197844)
	cmu (0.186393)
	sin (0.174948)
	mcp (0.170648)
	cut (0.169924)
	fhi (0.169578)
	cje (0.165235)
	nca (0.136874)
	pla (0.133672)
	thg (0.126791)
	ese (0.126502)
	clu (0.119646)
	pgl (0.118483)
	ecc (0.115035)
	cbl (0.114797)
	spc (0.113366)
	eje (0.0988338)