Ss1.1-rcmu26_o12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTGCAGCCAGCAGCCTGGAAACTGGAAACACTGGTCTCAGCCAACCTCCTCAGGGCAC ACCCTGGTTTCTCCCCAAAGAGTTGAGGAGAGATGACGCCAGCAACAGGAGGAACCGACC ACTGGAAGGGCTGGTGTACATGTACTTCATGTTCAGAAGAGAAGTTAGATCTTCCAGGGA ATTGCAATGTTGTGGCGTCTGGCTTGTATGTCACGTTTGTGTAAAATGGTATATTCTTTA AAATAGTGTTGATAACTGGAATATTGTATGTATGCTTGGAGATGCTTTGTGTGAACCTAA GACTGTCACTCAACAGATGTTGGATTGGGGAAAATCCAAAGCACAACTTCGAAATAAAAT ACGTTTTTAGGTTTCAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTGCAGCCAGCAGCCTGGAAACTGGAAACACTGGTCTCAGCCAACCTCCTCAGGGCAC ACCCTGGTTTCTCCCCAAAGAGTTGAGGAGAGATGACGCCAGCAACAGGAGGAACCGACC ACTGGAAGGGCTGGTGTACATGTACTTCATGTTCAGAAGAGAAGTTAGATCTTCCAGGGA ATTGCAATGTTGTGGCGTCTGGCTTGTATGTCACGTTTGTGTAAAATGGTATATTCTTTA AAATAGTGTTGATAACTGGAATATTGTATGTATGCTTGGAGATGCTTTGTGTGAACCTAA GACTGTCACTCAACAGATGTTGGATTGGGGAAAATCCAAAGCACAACTTCGAAATAAAAT ACGTTTTTAGGTTTCAAAAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 20-119, - strand, RNAz p=0.725956 | |
| 80-199, - strand, RNAz p=0.85512 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 20-119, - strand, RNAz p=0.725956 | |
| 80-199, - strand, RNAz p=0.85512 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-375, gnl|bosTau2|chr16 (4222241-4222613) | |
| 1-375, gnl|canFam2|chr38 (5741247-5741731) | |
| 1-375, gnl|canFam2|chr38 (5741247-5741719) | |
| 1-375, gnl|dasNov1|scaffold_3765 (48261-48741) | |
| 1-375, gnl|dasNov1|scaffold_3765 (48261-48729) | |
| 1-375, gnl|echTel1|scaffold_229154 (12196-12670) | |
| 1-375, gnl|echTel1|scaffold_229154 (12196-12667) | |
| 1-375, gnl|galGal2|chr26 (1066683-1067174) | |
| 1-375, gnl|hg17|chr1 (203025701-203026171) | |
| 1-375, gnl|Hg17|chr1 (203025801-203026173) | |
| 1-375, gnl|hg17|chr8 (138677159-138677658) | |
| 1-375, gnl|loxAfr1|scaffold_36827 (22065-22536) | |
| 1-375, gnl|loxAfr1|scaffold_36827 (22065-22533) | |
| 1-375, gnl|mm7|chr1 (131191075-131190618) | |
| 1-375, gnl|mm7|chr1 (131191075-131190620) | |
| 1-375, gnl|Mm7|chr1 (131190982-131190616) | |
| 1-375, gnl|monDom2|scaffold_13 (8413234-8413641) | |
| 1-375, gnl|monDom2|scaffold_13 (8413233-8413635) | |
| 1-375, gnl|panTro1|chr1 (186609912-186610382) | |
| 1-375, gnl|panTro1|chr7 (141658057-141658549) | |
| 1-375, gnl|rheMac2|chr1 (163898501-163898019) | |
| 1-375, gnl|rheMac2|chr1 (163898501-163898031) | |
| 1-375, gnl|rn3|chr13 (44245805-44245344) | |
| 1-375, gnl|rn3|chr13 (44245805-44245347) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-375, gnl|bosTau2|chr16 (4222241-4222613) | |
| 1-375, gnl|canFam2|chr38 (5741247-5741731) | |
| 1-375, gnl|canFam2|chr38 (5741247-5741719) | |
| 1-375, gnl|dasNov1|scaffold_3765 (48261-48741) | |
| 1-375, gnl|dasNov1|scaffold_3765 (48261-48729) | |
| 1-375, gnl|echTel1|scaffold_229154 (12196-12670) | |
| 1-375, gnl|echTel1|scaffold_229154 (12196-12667) | |
| 1-375, gnl|galGal2|chr26 (1066683-1067174) | |
| 1-375, gnl|hg17|chr1 (203025701-203026171) | |
| 1-375, gnl|Hg17|chr1 (203025801-203026173) | |
| 1-375, gnl|hg17|chr8 (138677159-138677658) | |
| 1-375, gnl|loxAfr1|scaffold_36827 (22065-22536) | |
| 1-375, gnl|loxAfr1|scaffold_36827 (22065-22533) | |
| 1-375, gnl|mm7|chr1 (131191075-131190618) | |
| 1-375, gnl|mm7|chr1 (131191075-131190620) | |
| 1-375, gnl|Mm7|chr1 (131190982-131190616) | |
| 1-375, gnl|monDom2|scaffold_13 (8413234-8413641) | |
| 1-375, gnl|monDom2|scaffold_13 (8413233-8413635) | |
| 1-375, gnl|panTro1|chr1 (186609912-186610382) | |
| 1-375, gnl|panTro1|chr7 (141658057-141658549) | |
| 1-375, gnl|rheMac2|chr1 (163898501-163898019) | |
| 1-375, gnl|rheMac2|chr1 (163898501-163898031) | |
| 1-375, gnl|rn3|chr13 (44245805-44245344) | |
| 1-375, gnl|rn3|chr13 (44245805-44245347) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.186393) | |
| che (0.136314) |