Ss1.1-rcmu27_c23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTCGCTCCTAGAGACGACACCTCAGGGACGATGGCAGAGGGAGATAATCGCAGCACCA ATCTGCTGGCTGCAGAGACTGCAAATCTGGAAGAGCAGCTGCAGGGATGGGGAGAAGTGA TGCTGATGGCAGATAAAGTCCTCCGATGGGAAAGAGCCTGGTTTCCACCTGCCATCATGG GCGTGGTTTCTTTGGTGTTTCTGACTATCTACTATCTAGATCCATCTGTTCTGTCCGGTG TTTCCTGTTTTGTGATGTTTTTGTGCTTGGCTGACTACCTGGTTCCCATTCTAGCACCTA GAATTTTTGGCTCCAATAAATGGACCACTGAGCAACAGCAAAGATTCCATGAAATTTGCA GCAATCTGGTAAAAACTCGACGCAGAGCTGTGGGCTGGTGGAAACGCCTCTTTACACTAA AGGAAGAAAAGCCTAAAATGTACTTCATGACCATGATCGTTTCTCTTGCCGCGGTGGCTT GGGTGGGACAGCAAGTCCACAACCTTCTTCTGACCTACCTGATAGTGACTTTCTTCCTGT TGCTTCCTGGACTAAACCAACACGGCATCATTTCGAAGTACATTGGAATGGCCAAAAGGG AGATAAACAAGCTTCTCAAACAAAAAGAGAAGAAAAATGAATGATGCACCTGCTTTATTC AGTGTGATTACTGGCGTGAACGCTGTCCCTGGAAACGGTGTTTGTTATGCTATCTGATAC TAAAACGTTACAGAAGTAGTTCTTTGCTCGCTCTCCTTGTGCCCTTAGTTATTAGAAGTT CCTCTAAGGCTTCGTGGCCCCGTGGCCCCGTGTCTCCGTGGCTGCCCCCTCATCGGCTGC CCTTATATGGACAATTCATTCGTCTGTACCACTCACTTTTCTTGATCACTCTCACCCAGG GTTAAAGTCTTTTCCAATAAGATAGCGGTGGGCTTCACTCTTTTGTACACCTAACAGTGA CTTGGGATAATTGCTGGAGTTGATCTTTGCTTTAGCTCGTAGTGGTCTATGACAACAGGA AGCTGGTTCTGCTGTCTACTTCCACAGGCTGCTTAAAAAACTCTGTGGCTTCGTGAATCT AGAGACCAAGTTTACCGCTTCTGATGAAGAAGAAAGACCAATTAAGACTCATTCCTCCTT CTGTTTCAGTACCATGGGAGAAGAATCCTCATGGAGTGACATGAAACTAATTCCATGCCG TAGTATGGGCTGGTTTCTCCCTTGTGCAGAATGTAGCCGTTTGTAGGAAGCTCGGATCCT CCCTCCCGGATGGGGAAACTGACAGCCTTCGATAGACCTCTTGTCCCCTTGCTCTGGAAC TTAGTACGGCCTTCAAGGCTTTTTGGTAGCAGGCTTCCAAAAGTTGGTGTTTAGGGTTTT ATATCTGATTTTCAACTAACTAAAACTGAAGTATCTAATAGGTGAAGACTCGCATGTCTA TAACCTTCACTCCAAGACCAGCCAATAAAGGATAGACGTCTGCCTGTGTTTAGTCAAGAT TCATTTTCATAGAAAAACTTCTCTTTTTTTCAAGACCAGCAAGCCTCAGGCTTCTTGGGT TACGGTAGTGCTGGCCACTTCGGTCCCCATAGATTGGGCGGAGGAGGTGGAGGGACGCTG GCCTCTGACTTTTTCCCTGGATGTTTCTCTGGAGCATGCGAGGGCTGTTGGTGAGAGCAG ACAGGCTGTGGCCAGAGTCGGCCTCTGGTCTCCAGAGACCATGTAATTCTTTTGAAAGCG TCTTAGCCTCATTCTCCTTCTTAGTACCTAGAAATCGAAGTAGTTAAAACCTGTAGGAAT GAACCTCTGTGGGCTGAAAATGTGACACATTTGGGAACAGTTCTTTCAACTCTGATGAAG TAGCTGTAATATAGTTTGTGAATTTGTTGCACTGATGCTGTAAAACCTGGACCCTGTCAC AGACGGTCTCTCTGTGTTTTCTCCCCTTCAATATTGCTGTGAACAGTGGCACCCATATAG CCTGTGTTTGCCTTTTCTTTCTTAATGTTTTGTATGAAAACCACAAACTACCTTAACTGA CGTGTGTTTTCCTCGTTGTAAATAAGCTTGTCTTCCTTTCCGGATTTTTTTGTGTGTATA TGTGTTTTACTTACGAATTAACTACTTTTGCAGTTTTAAGCCTGTATTTTTTCTTCTACT TTGTTTTGTGTAAAAGGGGAAAAATAAAAAAGCCGGCATCCCTAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTCGCTCCTAGAGACGACACCTCAGGGACGATGGCAGAGGGAGATAATCGCAGCACCA ATCTGCTGGCTGCAGAGACTGCAAATCTGGAAGAGCAGCTGCAGGGATGGGGAGAAGTGA TGCTGATGGCAGATAAAGTCCTCCGATGGGAAAGAGCCTGGTTTCCACCTGCCATCATGG GCGTGGTTTCTTTGGTGTTTCTGACTATCTACTATCTAGATCCATCTGTTCTGTCCGGTG TTTCCTGTTTTGTGATGTTTTTGTGCTTGGCTGACTACCTGGTTCCCATTCTAGCACCTA GAATTTTTGGCTCCAATAAATGGACCACTGAGCAACAGCAAAGATTCCATGAAATTTGCA GCAATCTGGTAAAAACTCGACGCAGAGCTGTGGGCTGGTGGAAACGCCTCTTTACACTAA AGGAAGAAAAGCCTAAAATGTACTTCATGACCATGATCGTTTCTCTTGCCGCGGTGGCTT GGGTGGGACAGCAAGTCCACAACCTTCTTCTGACCTACCTGATAGTGACTTTCTTCCTGT TGCTTCCTGGACTAAACCAACACGGCATCATTTCGAAGTACATTGGAATGGCCAAAAGGG AGATAAACAAGCTTCTCAAACAAAAAGAGAAGAAAAATGAATGATGCACCTGCTTTATTC AGTGTGATTACTGGCGTGAACGCTGTCCCTGGAAACGGTGTTTGTTATGCTATCTGATAC TAAAACGTTACAGAAGTAGTTCTTTGCTCGCTCTCCTTGTGCCCTTAGTTATTAGAAGTT CCTCTAAGGCTTCGTGGCCCCGTGGCCCCGTGTCTCCGTGGCTGCCCCCTCATCGGCTGC CCTTATATGGACAATTCATTCGTCTGTACCACTCACTTTTCTTGATCACTCTCACCCAGG GTTAAAGTCTTTTCCAATAAGATAGCGGTGGGCTTCACTCTTTTGTACACCTAACAGTGA CTTGGGATAATTGCTGGAGTTGATCTTTGCTTTAGCTCGTAGTGGTCTATGACAACAGGA AGCTGGTTCTGCTGTCTACTTCCACAGGCTGCTTAAAAAACTCTGTGGCTTCGTGAATCT AGAGACCAAGTTTACCGCTTCTGATGAAGAAGAAAGACCAATTAAGACTCATTCCTCCTT CTGTTTCAGTACCATGGGAGAAGAATCCTCATGGAGTGACATGAAACTAATTCCATGCCG TAGTATGGGCTGGTTTCTCCCTTGTGCAGAATGTAGCCGTTTGTAGGAAGCTCGGATCCT CCCTCCCGGATGGGGAAACTGACAGCCTTCGATAGACCTCTTGTCCCCTTGCTCTGGAAC TTAGTACGGCCTTCAAGGCTTTTTGGTAGCAGGCTTCCAAAAGTTGGTGTTTAGGGTTTT ATATCTGATTTTCAACTAACTAAAACTGAAGTATCTAATAGGTGAAGACTCGCATGTCTA TAACCTTCACTCCAAGACCAGCCAATAAAGGATAGACGTCTGCCTGTGTTTAGTCAAGAT TCATTTTCATAGAAAAACTTCTCTTTTTTTCAAGACCAGCAAGCCTCAGGCTTCTTGGGT TACGGTAGTGCTGGCCACTTCGGTCCCCATAGATTGGGCGGAGGAGGTGGAGGGACGCTG GCCTCTGACTTTTTCCCTGGATGTTTCTCTGGAGCATGCGAGGGCTGTTGGTGAGAGCAG ACAGGCTGTGGCCAGAGTCGGCCTCTGGTCTCCAGAGACCATGTAATTCTTTTGAAAGCG TCTTAGCCTCATTCTCCTTCTTAGTACCTAGAAATCGAAGTAGTTAAAACCTGTAGGAAT GAACCTCTGTGGGCTGAAAATGTGACACATTTGGGAACAGTTCTTTCAACTCTGATGAAG TAGCTGTAATATAGTTTGTGAATTTGTTGCACTGATGCTGTAAAACCTGGACCCTGTCAC AGACGGTCTCTCTGTGTTTTCTCCCCTTCAATATTGCTGTGAACAGTGGCACCCATATAG CCTGTGTTTGCCTTTTCTTTCTTAATGTTTTGTATGAAAACCACAAACTACCTTAACTGA CGTGTGTTTTCCTCGTTGTAAATAAGCTTGTCTTCCTTTCCGGATTTTTTTGTGTGTATA TGTGTTTTACTTACGAATTAACTACTTTTGCAGTTTTAAGCCTGTATTTTTTCTTCTACT TTGTTTTGTGTAAAAGGGGAAAAATAAAAAAGCCGGCATCCCTAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 61-2182, - strand, RNAz p=0.994114 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 61-2182, - strand, RNAz p=0.994114 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 61-203, gnl|bosTau2|chr25 (11793546-11793688) | |
| 61-203, gnl|canFam2|chr6 (29341405-29341264) | |
| 61-203, gnl|danRer3|chr3 (26309452-26309593) | |
| 61-203, gnl|dasNov1|scaffold_1470 (3520-3661) | |
| 61-203, gnl|echTel1|scaffold_262514 (1873-2006) | |
| 61-203, gnl|fr1|chrUn (131761075-131761216) | |
| 61-203, gnl|galGal2|chr14 (10490764-10490903) | |
| 61-203, gnl|hg17|chr16 (18717524-18717665) | |
| 61-203, gnl|Hg17|chr16 (18717665-18717523) | |
| 61-203, gnl|loxAfr1|scaffold_613 (7769-7910) | |
| 61-203, gnl|mm7|chr7 (114049707-114049848) | |
| 61-203, gnl|Mm7|chr7 (114049848-114049706) | |
| 61-203, gnl|monDom2|scaffold_19 (38825893-38826034) | |
| 61-203, gnl|oryCun1|scaffold_170432 (4585-4726) | |
| 61-203, gnl|panTro1|chr18 (19175739-19175880) | |
| 61-203, gnl|rheMac2|chr20 (17791477-17791618) | |
| 61-203, gnl|rn3|chr1 (176478768-176478909) | |
| 61-203, gnl|tetNig1|chr3 (14000775-14000916) | |
| 61-203, gnl|xenTro1|scaffold_214 (1179662-1179798) | |
| 322-445, gnl|bosTau2|chr25 (11796493-11796617) | |
| 322-445, gnl|canFam2|chr6 (29344300-29344163) | |
| 322-445, gnl|danRer3|chr3 (26303006-26303140) | |
| 322-445, gnl|dasNov1|scaffold_1470 (88-226) | |
| 322-445, gnl|echTel1|scaffold_322899 (165687-165549) | |
| 322-445, gnl|fr1|chrUn (131759548-131759676) | |
| 322-445, gnl|galGal2|chr14 (10484250-10484405) | |
| 322-445, gnl|hg17|chr16 (18714278-18714416) | |
| 322-445, gnl|Hg17|chr16 (18714405-18714281) | |
| 322-445, gnl|loxAfr1|scaffold_613 (4212-4352) | |
| 322-445, gnl|mm7|chr7 (114044490-114044628) | |
| 322-445, gnl|Mm7|chr7 (114044617-114044481) | |
| 322-445, gnl|monDom2|scaffold_19 (38818379-38818517) | |
| 322-445, gnl|oryCun1|scaffold_170432 (449-587) | |
| 322-445, gnl|panTro1|chr18 (19172479-19172593) | |
| 322-445, gnl|rheMac2|chr20 (17788202-17788341) | |
| 322-445, gnl|rn3|chr1 (176474836-176474970) | |
| 322-445, gnl|tetNig1|chr3 (13999405-13999536) | |
| 322-445, gnl|xenTro1|scaffold_214 (1177219-1177353) | |
| 1409-1516, gnl|bosTau2|chr10 (2322129-2322023) | |
| 1409-1516, gnl|Hg17|chr16 (18711287-18711186) | |
| 1720-2182, gnl|bosTau2|chr29 (5444283-5444720) | |
| 1720-2182, gnl|Hg17|chr16 (18710902-18710504) | |
| 1754-2099, gnl|bosTau2|chr10 (2321951-2321615) | |
| 1754-2099, gnl|Hg17|chr16 (18711108-18710593) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 61-203, gnl|bosTau2|chr25 (11793546-11793688) | |
| 61-203, gnl|canFam2|chr6 (29341405-29341264) | |
| 61-203, gnl|danRer3|chr3 (26309452-26309593) | |
| 61-203, gnl|dasNov1|scaffold_1470 (3520-3661) | |
| 61-203, gnl|echTel1|scaffold_262514 (1873-2006) | |
| 61-203, gnl|fr1|chrUn (131761075-131761216) | |
| 61-203, gnl|galGal2|chr14 (10490764-10490903) | |
| 61-203, gnl|hg17|chr16 (18717524-18717665) | |
| 61-203, gnl|Hg17|chr16 (18717665-18717523) | |
| 61-203, gnl|loxAfr1|scaffold_613 (7769-7910) | |
| 61-203, gnl|mm7|chr7 (114049707-114049848) | |
| 61-203, gnl|Mm7|chr7 (114049848-114049706) | |
| 61-203, gnl|monDom2|scaffold_19 (38825893-38826034) | |
| 61-203, gnl|oryCun1|scaffold_170432 (4585-4726) | |
| 61-203, gnl|panTro1|chr18 (19175739-19175880) | |
| 61-203, gnl|rheMac2|chr20 (17791477-17791618) | |
| 61-203, gnl|rn3|chr1 (176478768-176478909) | |
| 61-203, gnl|tetNig1|chr3 (14000775-14000916) | |
| 61-203, gnl|xenTro1|scaffold_214 (1179662-1179798) | |
| 322-445, gnl|bosTau2|chr25 (11796493-11796617) | |
| 322-445, gnl|canFam2|chr6 (29344300-29344163) | |
| 322-445, gnl|danRer3|chr3 (26303006-26303140) | |
| 322-445, gnl|dasNov1|scaffold_1470 (88-226) | |
| 322-445, gnl|echTel1|scaffold_322899 (165687-165549) | |
| 322-445, gnl|fr1|chrUn (131759548-131759676) | |
| 322-445, gnl|galGal2|chr14 (10484250-10484405) | |
| 322-445, gnl|hg17|chr16 (18714278-18714416) | |
| 322-445, gnl|Hg17|chr16 (18714405-18714281) | |
| 322-445, gnl|loxAfr1|scaffold_613 (4212-4352) | |
| 322-445, gnl|mm7|chr7 (114044490-114044628) | |
| 322-445, gnl|Mm7|chr7 (114044617-114044481) | |
| 322-445, gnl|monDom2|scaffold_19 (38818379-38818517) | |
| 322-445, gnl|oryCun1|scaffold_170432 (449-587) | |
| 322-445, gnl|panTro1|chr18 (19172479-19172593) | |
| 322-445, gnl|rheMac2|chr20 (17788202-17788341) | |
| 322-445, gnl|rn3|chr1 (176474836-176474970) | |
| 322-445, gnl|tetNig1|chr3 (13999405-13999536) | |
| 322-445, gnl|xenTro1|scaffold_214 (1177219-1177353) | |
| 1409-1516, gnl|bosTau2|chr10 (2322129-2322023) | |
| 1409-1516, gnl|Hg17|chr16 (18711287-18711186) | |
| 1720-2182, gnl|bosTau2|chr29 (5444283-5444720) | |
| 1720-2182, gnl|Hg17|chr16 (18710902-18710504) | |
| 1754-2099, gnl|bosTau2|chr10 (2321951-2321615) | |
| 1754-2099, gnl|Hg17|chr16 (18711108-18710593) |
| Expressed library(ies): 54 entry(ies) | More info |
| Expressed library(ies): 54 entry(ies) | Help | Less info |
| spc (1.92722) | |
| cbe (1.43541) | |
| fat (1.17942) | |
| rec (1.03842) | |
| mga (0.96123) | |
| sag (0.913576) | |
| thg (0.887536) | |
| cty (0.832639) | |
| cje (0.826173) | |
| cmu (0.745573) | |
| ova (0.645661) | |
| cbl (0.573987) | |
| mgm (0.541028) | |
| sin (0.524843) | |
| eye (0.511509) | |
| sug (0.509165) | |
| pan (0.471921) | |
| fco (0.471624) | |
| ski (0.440205) | |
| amn (0.417711) | |
| fcc (0.39557) | |
| tra (0.369276) | |
| gul (0.355177) | |
| fhi (0.339155) | |
| cki (0.330469) | |
| nco (0.323468) | |
| isp (0.300752) | |
| nbm (0.297974) | |
| cte (0.29274) | |
| lin (0.291206) | |
| csk (0.281492) | |
| bla (0.248694) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| med (0.232504) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| jej (0.197844) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ret (0.128733) | |
| ebs (0.118301) |
| Expressed library(ies): 54 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (1.92722) | |
| cbe (1.43541) | |
| fat (1.17942) | |
| rec (1.03842) | |
| mga (0.96123) | |
| sag (0.913576) | |
| thg (0.887536) | |
| cty (0.832639) | |
| cje (0.826173) | |
| cmu (0.745573) | |
| ova (0.645661) | |
| cbl (0.573987) | |
| mgm (0.541028) | |
| sin (0.524843) | |
| eye (0.511509) | |
| sug (0.509165) | |
| pan (0.471921) | |
| fco (0.471624) | |
| ski (0.440205) | |
| amn (0.417711) | |
| fcc (0.39557) | |
| tra (0.369276) | |
| gul (0.355177) | |
| fhi (0.339155) | |
| cki (0.330469) | |
| nco (0.323468) | |
| isp (0.300752) | |
| nbm (0.297974) | |
| cte (0.29274) | |
| lin (0.291206) | |
| csk (0.281492) | |
| bla (0.248694) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| med (0.232504) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| jej (0.197844) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ret (0.128733) | |
| ebs (0.118301) |