Non-Coding RNA Search

Ss1.1-rcmu28_g15.5

Sequence:


               
               ATGCACTTGACATAGATTTAATTCTTACTCCCCACAGCTTCAGGTATTTTTCATTAGTAA
ATCAATTTGACACACTGAATGGAATAATACTAAGAAAAAACTGTTAAGTATTTTATTTTG
TGATGACTTGGCAGCAGATTACGTTTCAAGACCTTACAGAGAGAGGAACATAGATGGACA
ATCCTAGATCGTAAAATGCTAACAAAAAACAGGTGGAGTAAGAGTACCCTGAAGACAAAG
GGAGAGGTTGGGGCTTGAGAGATTTCACAGAGTAGCTTAGCTGAAACCTGATATCAGAAG
CAGCCTTTAACAGAAGCCTCTTGGCAATTACATGGTACTAACCAGAGCACGGAAGTACAG
GTTGAAACCAAGTTGCAGTGGGAAATCAAAGGTGAGAGGTAGTTTATTGGAAACCAGTAA
ATGACAGGTTGCACAGTCCTGAAATCTCTTCTAACAAAGTAACTGCACGGTAGCAAGGAC
TAGCCATTCTCAAAGCCCTTCTTTTTCAGTGTTCTCCTTCACCTTGGCACACAAGTATGT
TTTAATGCCATACATTAAAAAAATATTTACAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCACTTGACATAGATTTAATTCTTACTCCCCACAGCTTCAGGTATTTTTCATTAGTAA
ATCAATTTGACACACTGAATGGAATAATACTAAGAAAAAACTGTTAAGTATTTTATTTTG
TGATGACTTGGCAGCAGATTACGTTTCAAGACCTTACAGAGAGAGGAACATAGATGGACA
ATCCTAGATCGTAAAATGCTAACAAAAAACAGGTGGAGTAAGAGTACCCTGAAGACAAAG
GGAGAGGTTGGGGCTTGAGAGATTTCACAGAGTAGCTTAGCTGAAACCTGATATCAGAAG
CAGCCTTTAACAGAAGCCTCTTGGCAATTACATGGTACTAACCAGAGCACGGAAGTACAG
GTTGAAACCAAGTTGCAGTGGGAAATCAAAGGTGAGAGGTAGTTTATTGGAAACCAGTAA
ATGACAGGTTGCACAGTCCTGAAATCTCTTCTAACAAAGTAACTGCACGGTAGCAAGGAC
TAGCCATTCTCAAAGCCCTTCTTTTTCAGTGTTCTCCTTCACCTTGGCACACAAGTATGT
TTTAATGCCATACATTAAAAAAATATTTACAAAAAA

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-576, gnl|bosTau2|chr2 (55158906-55159483)
               

               
               1-576, gnl|canFam2|chr37 (17581766-17582441)
               

               
               1-576, gnl|echTel1|scaffold_295028 (69953-69295)
               

               
               1-576, gnl|galGal2|chr7 (13528718-13528167)
               

               
               1-576, gnl|hg17|chr2 (206684395-206685016)
               

               
               1-576, gnl|Hg17|chr2 (206685088-206684507)
               

               
               1-576, gnl|mm7|chr1 (63288877-63289407)
               

               
               1-576, gnl|Mm7|chr1 (63289482-63288980)
               

               
               1-576, gnl|monDom2|scaffold_39 (17416668-17416047)
               

               
               1-576, gnl|oryCun1|scaffold_208259 (6759-6124)
               

               
               1-576, gnl|panTro1|chr13 (96717068-96717689)
               

               
               1-576, gnl|rheMac2|chr12 (69883142-69883762)
               

               
               1-576, gnl|rn3|chr9 (61846218-61846726)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr2 (55158906-55159483)
               

               
               1-576, gnl|canFam2|chr37 (17581766-17582441)
               

               
               1-576, gnl|echTel1|scaffold_295028 (69953-69295)
               

               
               1-576, gnl|galGal2|chr7 (13528718-13528167)
               

               
               1-576, gnl|hg17|chr2 (206684395-206685016)
               

               
               1-576, gnl|Hg17|chr2 (206685088-206684507)
               

               
               1-576, gnl|mm7|chr1 (63288877-63289407)
               

               
               1-576, gnl|Mm7|chr1 (63289482-63288980)
               

               
               1-576, gnl|monDom2|scaffold_39 (17416668-17416047)
               

               
               1-576, gnl|oryCun1|scaffold_208259 (6759-6124)
               

               
               1-576, gnl|panTro1|chr13 (96717068-96717689)
               

               
               1-576, gnl|rheMac2|chr12 (69883142-69883762)
               

               
               1-576, gnl|rn3|chr9 (61846218-61846726)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cmu (0.372787)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	1-576, gnl\|bosTau2\|chr2 (55158906-55159483)
	1-576, gnl\|canFam2\|chr37 (17581766-17582441)
	1-576, gnl\|echTel1\|scaffold_295028 (69953-69295)
	1-576, gnl\|galGal2\|chr7 (13528718-13528167)
	1-576, gnl\|hg17\|chr2 (206684395-206685016)
	1-576, gnl\|Hg17\|chr2 (206685088-206684507)
	1-576, gnl\|mm7\|chr1 (63288877-63289407)
	1-576, gnl\|Mm7\|chr1 (63289482-63288980)
	1-576, gnl\|monDom2\|scaffold_39 (17416668-17416047)
	1-576, gnl\|oryCun1\|scaffold_208259 (6759-6124)
	1-576, gnl\|panTro1\|chr13 (96717068-96717689)
	1-576, gnl\|rheMac2\|chr12 (69883142-69883762)
	1-576, gnl\|rn3\|chr9 (61846218-61846726)