Non-Coding RNA Search

Ss1.1-rcmu28_o5.5

Sequence:


               
               CTGGCATGATCGGGTTCGAGATAACACCCAACTACGTGGACTCCAGCCCCGCTGGCATCG
TGGTGTCCCCCTGGTGCAGTTGTCGTGGGAGCGGAAACCTGGAGGAGGAGTGTGAGAAGT
TTCTGAGGGACTTCACCGAGAACCCGTGCCTGCGGAACGCCATCCAGGCCTTTGGCAATG
GCACAGATGTGAACCTGTCCCCGAAAAACCCCTCATTCCAGGCCACGCAGGCCCCTCGAG
TAGAGAAGACACCTTCTTTGCCAGATGACCTCAGTGATAGCACCAGCCTGGGCACCAGCG
TCATCACCACCTGCACATCTGTCCAGGAACAGGGGTTGAAGACCAATAGCTCCAAAGAAT
TAAGCATGTGCTTCACAGAGCTCACGACCAATATCATCCCAGGGAGTAACAAGGTGATCA
GACCTAACTCAGGCCCCCGCAGAGCCAGACCGTCGGCTGCCTTGACCGCTGTCTCCTTCC
TGATGCTGAAGCTGGCCTTGTAGGCTCTGGGAACCGCGTCAGGAAATTTCTGAAAGCTAC
ACAGATGAGGACACCCGCCTGACAAAATGGAAACACATACAGGCACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCATGATCGGGTTCGAGATAACACCCAACTACGTGGACTCCAGCCCCGCTGGCATCG
TGGTGTCCCCCTGGTGCAGTTGTCGTGGGAGCGGAAACCTGGAGGAGGAGTGTGAGAAGT
TTCTGAGGGACTTCACCGAGAACCCGTGCCTGCGGAACGCCATCCAGGCCTTTGGCAATG
GCACAGATGTGAACCTGTCCCCGAAAAACCCCTCATTCCAGGCCACGCAGGCCCCTCGAG
TAGAGAAGACACCTTCTTTGCCAGATGACCTCAGTGATAGCACCAGCCTGGGCACCAGCG
TCATCACCACCTGCACATCTGTCCAGGAACAGGGGTTGAAGACCAATAGCTCCAAAGAAT
TAAGCATGTGCTTCACAGAGCTCACGACCAATATCATCCCAGGGAGTAACAAGGTGATCA
GACCTAACTCAGGCCCCCGCAGAGCCAGACCGTCGGCTGCCTTGACCGCTGTCTCCTTCC
TGATGCTGAAGCTGGCCTTGTAGGCTCTGGGAACCGCGTCAGGAAATTTCTGAAAGCTAC
ACAGATGAGGACACCCGCCTGACAAAATGGAAACACATACAGGCACAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32816035|gb|AAP88378.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32816035|gb|AAP88378.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               154-327, gnl|bosTau2|chr8 (36429153-36429326)
               

               
               154-327, gnl|Hg17|chr8 (21604769-21604596)
               

               
               154-327, gnl|Mm7|chr14 (65614042-65614215)
               


               
               376-588, gnl|bosTau2|chr8 (36440754-36440966)
               

               
               376-588, gnl|Hg17|chr8 (21595197-21594991)
               

               
               376-588, gnl|Mm7|chr14 (65624162-65624378)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               154-327, gnl|bosTau2|chr8 (36429153-36429326)
               

               
               154-327, gnl|Hg17|chr8 (21604769-21604596)
               

               
               154-327, gnl|Mm7|chr14 (65614042-65614215)
               


               
               376-588, gnl|bosTau2|chr8 (36440754-36440966)
               

               
               376-588, gnl|Hg17|chr8 (21595197-21594991)
               

               
               376-588, gnl|Mm7|chr14 (65624162-65624378)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cmu (0.186393)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	154-327, gnl\|bosTau2\|chr8 (36429153-36429326)
	154-327, gnl\|Hg17\|chr8 (21604769-21604596)
	154-327, gnl\|Mm7\|chr14 (65614042-65614215)

	376-588, gnl\|bosTau2\|chr8 (36440754-36440966)
	376-588, gnl\|Hg17\|chr8 (21595197-21594991)
	376-588, gnl\|Mm7\|chr14 (65624162-65624378)