Non-Coding RNA Search

Ss1.1-rcmu32_a17.5

Sequence:


               
               TTTGAGCTCATCTACAAGCAGGTGAGGTGGCCAGGCCCAGGCAGGACCCAGAGAGGCCAC
CCCATAGTGAAGCTCAGGGCTCTGTGGTCACACAGACCTGGTTCAAGTTCTTGTTCTGCC
ACAATGTCTGGGTACAGTCACTTCACCCCCTTGAGCCTCCGTTTCCCCATCTATAAGATG
GAGGTGCTGTCCCCATCTTTCTCTTGGGTTTTGAGAGATGAAATGAGTTAATGTGTATGG
ATAATATTTTTAGAGGCCTGTAGCACAGTGTTAAAAGCATGGACTAACACCCCCCTGCTC
AACTTCATAACCTCTAGGGGTCTCAGCTTCCTTATTTGTAGAGCGAGAATGAAAATGATA
TCCTCTTAGAGTTCCCGTTGTGGCTCAGGCAAAAAAAAAAAGACAAATTCTGACTAGTAT
CTCAGGATGTGGGTTCAGCAGCTACAGCTCCAATTCGCCCCTAGCCAGGGAACTTCCCTA
CGCTGTAGGTTTGGCCCTGAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAGCTCATCTACAAGCAGGTGAGGTGGCCAGGCCCAGGCAGGACCCAGAGAGGCCAC
CCCATAGTGAAGCTCAGGGCTCTGTGGTCACACAGACCTGGTTCAAGTTCTTGTTCTGCC
ACAATGTCTGGGTACAGTCACTTCACCCCCTTGAGCCTCCGTTTCCCCATCTATAAGATG
GAGGTGCTGTCCCCATCTTTCTCTTGGGTTTTGAGAGATGAAATGAGTTAATGTGTATGG
ATAATATTTTTAGAGGCCTGTAGCACAGTGTTAAAAGCATGGACTAACACCCCCCTGCTC
AACTTCATAACCTCTAGGGGTCTCAGCTTCCTTATTTGTAGAGCGAGAATGAAAATGATA
TCCTCTTAGAGTTCCCGTTGTGGCTCAGGCAAAAAAAAAAAGACAAATTCTGACTAGTAT
CTCAGGATGTGGGTTCAGCAGCTACAGCTCCAATTCGCCCCTAGCCAGGGAACTTCCCTA
CGCTGTAGGTTTGGCCCTGAAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-181, - strand, RNAz p=0.872639

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-181, - strand, RNAz p=0.872639

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-297, gnl|bosTau2|chr22 (11967927-11968224)
               

               
               1-297, gnl|Hg17|chr3 (9846059-9846373)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-297, gnl|bosTau2|chr22 (11967927-11968224)
               

               
               1-297, gnl|Hg17|chr3 (9846059-9846373)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cmu (0.186393)
               

               
               cst (0.140036)
               

               
               kid (0.129735)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               cst (0.140036)
               

               
               kid (0.129735)

	1-297, gnl\|bosTau2\|chr22 (11967927-11968224)
	1-297, gnl\|Hg17\|chr3 (9846059-9846373)