Non-Coding RNA Search

Ss1.1-rcmu32_a19.5

Sequence:


               
               CCGCCAGCCACCCCGTTCACCGTCTCTCTGGAAGCTTGGTGGCTGGGAAGTTGCTGTAGC
CAACTCCAGTCCACGAGGGCCGGACGGCGCTGAGTCGGCGGCGGGTAGTCTGCAGCATCT
GCCCACTACAGCAGCAGTAGTCGCGATGAGTTTGCCTCTCAATCCCAAACCTTTCCTCAA
TGGGTTAACAGGGAAGCCAGTGATGGTGAAACTTAAGTGGGGAATGGAGTACAAAGGCTA
CCTGGTGTCTGTAGATGGCTATATGAACATGCAGCTTGCAAACACAGAAGAATACATAGA
TGGAGCATTGTCTGGACATCTGGGTGAAGTTTTAATAAGGTGTAATAATGTCCTTTATAT
CAGGGGTGTTGAAGAAGAAGAAGAAGATGGGGAAATGAGAGAATAGCATCTTTTGGGGGA
GATTTTTTTTTATATATATTTGTAGACAATAAAGATGTGTTTGTTTTTCAAAAAAAAAAA
AAAAAAAAAAAAAAATTGTTAAACTTGCCAAAGCAGTTTGTAGACAATTGGAGCTGTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCAGCCACCCCGTTCACCGTCTCTCTGGAAGCTTGGTGGCTGGGAAGTTGCTGTAGC
CAACTCCAGTCCACGAGGGCCGGACGGCGCTGAGTCGGCGGCGGGTAGTCTGCAGCATCT
GCCCACTACAGCAGCAGTAGTCGCGATGAGTTTGCCTCTCAATCCCAAACCTTTCCTCAA
TGGGTTAACAGGGAAGCCAGTGATGGTGAAACTTAAGTGGGGAATGGAGTACAAAGGCTA
CCTGGTGTCTGTAGATGGCTATATGAACATGCAGCTTGCAAACACAGAAGAATACATAGA
TGGAGCATTGTCTGGACATCTGGGTGAAGTTTTAATAAGGTGTAATAATGTCCTTTATAT
CAGGGGTGTTGAAGAAGAAGAAGAAGATGGGGAAATGAGAGAATAGCATCTTTTGGGGGA
GATTTTTTTTTATATATATTTGTAGACAATAAAGATGTGTTTGTTTTTCAAAAAAAAAAA
AAAAAAAAAAAAAAATTGTTAAACTTGCCAAAGCAGTTTGTAGACAATTGGAGCTGTTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6DET8_XENTR

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6DET8_XENTR

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               99-480, gnl|bosTau2|chr19 (38072912-38072543)
               

               
               99-480, gnl|Hg17|chr1 (201095283-201095647)
               

               
               99-480, gnl|Mm7|chr4 (149305017-149304623)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-480, gnl|bosTau2|chr19 (38072912-38072543)
               

               
               99-480, gnl|Hg17|chr1 (201095283-201095647)
               

               
               99-480, gnl|Mm7|chr4 (149305017-149304623)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               cki (0.991408)
               

               
               che (0.954198)
               

               
               cte (0.87822)
               

               
               cje (0.826173)
               

               
               cmu (0.745573)
               

               
               cst (0.560146)
               

               
               sto (0.539471)
               

               
               cut (0.509771)
               

               
               cbe (0.478469)
               

               
               csk (0.422238)
               

               
               elu (0.385356)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               bfe (0.299715)
               

               
               nbm (0.297974)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               eep (0.245128)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.991408)
               

               
               che (0.954198)
               

               
               cte (0.87822)
               

               
               cje (0.826173)
               

               
               cmu (0.745573)
               

               
               cst (0.560146)
               

               
               sto (0.539471)
               

               
               cut (0.509771)
               

               
               cbe (0.478469)
               

               
               csk (0.422238)
               

               
               elu (0.385356)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               bfe (0.299715)
               

               
               nbm (0.297974)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               eep (0.245128)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	99-480, gnl\|bosTau2\|chr19 (38072912-38072543)
	99-480, gnl\|Hg17\|chr1 (201095283-201095647)
	99-480, gnl\|Mm7\|chr4 (149305017-149304623)

	cki (0.991408)
	che (0.954198)
	cte (0.87822)
	cje (0.826173)
	cmu (0.745573)
	cst (0.560146)
	sto (0.539471)
	cut (0.509771)
	cbe (0.478469)
	csk (0.422238)
	elu (0.385356)
	ill (0.351185)
	duo (0.345602)
	bfe (0.299715)
	nbm (0.297974)
	pty (0.285429)
	fce (0.271592)
	eep (0.245128)
	nms (0.213858)
	jej (0.197844)
	aor (0.195274)
	rec (0.17307)
	nje (0.16592)
	eli (0.151814)
	liv (0.146284)
	hlv (0.139256)
	ese (0.126502)
	cly (0.120642)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)
	spc (0.113366)
	eje (0.0988338)