Non-Coding RNA Search

Ss1.1-rcmu32_g13.5

Sequence:


               
               CTGGGCGGGCTGGGAGGCGCGGGTTGAAAAGTCTCGTTCCAAGTTTGGAGAGAGAGAGAA
GAGCGTCTCAGACCTCGGTACCCGCAATCGGGGAGGAGGTAGGAGAGAAGGACGCGGCGT
CTGGGGAGCACCCAGGCTGAAAGACGGAGCTGAGGCTTCGAGAGCTGGAAGTGTGTGACG
CGCCTGGGAAAGGCAGGAGCGCCTACCGTTGGGCTGCTCTTGGCTAGCGAGGGGAGTCCG
AGGCGGCGGCGAGGGGCAAACGACCCGACGCAAGATGGCGAGTAAAGAGATGTTTGAAGA
TACTGTGGAGGAGCGTGTCATCAATGAAGAATATAAAATCTGGAAGAAGAATACACCGTT
TCTGTATGACCTGGTTATGACCCATGCTCTTCAGTGGCCGAGTCTTACCGTTCAGTGGCT
TCCTGAAGTGACTAAACCGGAAGGAAAGGATTATGCCCTTCATTGGCTAGTGCTGGGGAC
TCACACATCTGATGAGCAGAATCATCTCGTGGTTGCTCGGGTCCATATTCCGAATGATGA
TGCACAGTTTGATGCTTCCCACTGTGACAGTGAGAAGGGTGAATTTGGTGGCTTTGGTTC
TGTAACAGGAAAAATTGAATGTGAAATTAAAATTAACCACGAAGGAGAAGTAAACCGTGC
TCGATACATGCCGCAGAATCCTCACATCATTGCTACAAAAACACCGTCTTCTGACGTGCT
GGTTTTTGACTATACAAAGCACCCTGCTAAACCAGACCCAAGTGGAGAATGTAATCCTGA
TCTTCGGCTAAGAGGCCACCAAAAGGAAGGCTATGGTCTTTCCTGGAATTCGAACTTGAG
TGGACATCTCCTAAGTGCATCTGACGACCATACTGTCTGTCTGTGGGATATCAATGCAGG
ACCAAAGGAAGGCAAAATTGTGGATGCTAAAGCGATTTTTACTGGCCACTCGGCTGTTGT
AGAGGATGTGGCCTGGCACCTGCTGCATGAGTCATTGTTTGGATCTGTTGCTGATGATCA
GAAACTTATGATATGGGACACCAGGTCCAATACCACCTCCAAGCCGAGCCACCTGGTGGA
TGCACACACCGCCGAGGTCAATTGCCTGTCGTTCAATCCCTACAGCGAGTTCATTCTCGC
CACTGGCTCTGCGGATAAGACTGTAGCTTTATGGGACCTGCGTAATTTAAAATTGAAACT
CCATACCTTCGAATCTCATAAAGATGAAATTTTCCAGGTCCACTGGTCTCCACATAATGA
AACTATTCTGGCTTCAAGTGGTACTGATCGCCGTCTGAACGTGTGGGATTTAAGCAAAAT
TGGAGAAGAACAGTCGGCAGAAGACGCAGAAGATGGGCCTCCAGAACTCCTGTTCATTCA
TGGAGGACACACTGCCAAGATATCAGATTTTAGCTGGAACCCCAATGAGCCTTGGGTCAT
TTGCTCAGTGTCGGAGGATAACATCATGCAGATATGGCAAATGGCTGAAAATATTTACAA
TGATGAAGAGTCAGATGTCACAACATCGGAACTGGAGGGGCAAGGATCTTAAACCCAAAG
TACGAGCAATGTTTCTCTTGAATGTAATGCTACACACATGCTTGGTTTATCAAGCGCCAA
CATGGCATTGTATAGTAGGAAGTCTCAGTGGTGGCGTATGGCGTTCTTTACCTTCTGATC
CTAGCACTTTGAGTGAGCTGTTGCGTACTGTATCATATTGTAGCTTTTAGGGAAGAAAGA
AATGTTGCTTAAGAAAGAAAGATCAGCGTTGTTTTAAAATACGAGTAGCAGGGGACTGCC
TTTGATTCAACTATTTTAAGTCTTGTTTTCTCAAACTAAGTGCTTGCTGTTCCCAAATAT
GCAAGAATAACTTTTACACTTTTTCCCTCCAACACTTCTTGATTGGCTTTGCAGAAATAA
AGTTTTAAAATAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGCGGGCTGGGAGGCGCGGGTTGAAAAGTCTCGTTCCAAGTTTGGAGAGAGAGAGAA
GAGCGTCTCAGACCTCGGTACCCGCAATCGGGGAGGAGGTAGGAGAGAAGGACGCGGCGT
CTGGGGAGCACCCAGGCTGAAAGACGGAGCTGAGGCTTCGAGAGCTGGAAGTGTGTGACG
CGCCTGGGAAAGGCAGGAGCGCCTACCGTTGGGCTGCTCTTGGCTAGCGAGGGGAGTCCG
AGGCGGCGGCGAGGGGCAAACGACCCGACGCAAGATGGCGAGTAAAGAGATGTTTGAAGA
TACTGTGGAGGAGCGTGTCATCAATGAAGAATATAAAATCTGGAAGAAGAATACACCGTT
TCTGTATGACCTGGTTATGACCCATGCTCTTCAGTGGCCGAGTCTTACCGTTCAGTGGCT
TCCTGAAGTGACTAAACCGGAAGGAAAGGATTATGCCCTTCATTGGCTAGTGCTGGGGAC
TCACACATCTGATGAGCAGAATCATCTCGTGGTTGCTCGGGTCCATATTCCGAATGATGA
TGCACAGTTTGATGCTTCCCACTGTGACAGTGAGAAGGGTGAATTTGGTGGCTTTGGTTC
TGTAACAGGAAAAATTGAATGTGAAATTAAAATTAACCACGAAGGAGAAGTAAACCGTGC
TCGATACATGCCGCAGAATCCTCACATCATTGCTACAAAAACACCGTCTTCTGACGTGCT
GGTTTTTGACTATACAAAGCACCCTGCTAAACCAGACCCAAGTGGAGAATGTAATCCTGA
TCTTCGGCTAAGAGGCCACCAAAAGGAAGGCTATGGTCTTTCCTGGAATTCGAACTTGAG
TGGACATCTCCTAAGTGCATCTGACGACCATACTGTCTGTCTGTGGGATATCAATGCAGG
ACCAAAGGAAGGCAAAATTGTGGATGCTAAAGCGATTTTTACTGGCCACTCGGCTGTTGT
AGAGGATGTGGCCTGGCACCTGCTGCATGAGTCATTGTTTGGATCTGTTGCTGATGATCA
GAAACTTATGATATGGGACACCAGGTCCAATACCACCTCCAAGCCGAGCCACCTGGTGGA
TGCACACACCGCCGAGGTCAATTGCCTGTCGTTCAATCCCTACAGCGAGTTCATTCTCGC
CACTGGCTCTGCGGATAAGACTGTAGCTTTATGGGACCTGCGTAATTTAAAATTGAAACT
CCATACCTTCGAATCTCATAAAGATGAAATTTTCCAGGTCCACTGGTCTCCACATAATGA
AACTATTCTGGCTTCAAGTGGTACTGATCGCCGTCTGAACGTGTGGGATTTAAGCAAAAT
TGGAGAAGAACAGTCGGCAGAAGACGCAGAAGATGGGCCTCCAGAACTCCTGTTCATTCA
TGGAGGACACACTGCCAAGATATCAGATTTTAGCTGGAACCCCAATGAGCCTTGGGTCAT
TTGCTCAGTGTCGGAGGATAACATCATGCAGATATGGCAAATGGCTGAAAATATTTACAA
TGATGAAGAGTCAGATGTCACAACATCGGAACTGGAGGGGCAAGGATCTTAAACCCAAAG
TACGAGCAATGTTTCTCTTGAATGTAATGCTACACACATGCTTGGTTTATCAAGCGCCAA
CATGGCATTGTATAGTAGGAAGTCTCAGTGGTGGCGTATGGCGTTCTTTACCTTCTGATC
CTAGCACTTTGAGTGAGCTGTTGCGTACTGTATCATATTGTAGCTTTTAGGGAAGAAAGA
AATGTTGCTTAAGAAAGAAAGATCAGCGTTGTTTTAAAATACGAGTAGCAGGGGACTGCC
TTTGATTCAACTATTTTAAGTCTTGTTTTCTCAAACTAAGTGCTTGCTGTTCCCAAATAT
GCAAGAATAACTTTTACACTTTTTCCCTCCAACACTTCTTGATTGGCTTTGCAGAAATAA
AGTTTTAAAATAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13929162|ref|NP_114004.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13929162|ref|NP_114004.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-113, - strand, RNAz p=0.643333
               

               
               177-290, + strand, RNAz p=0.665872

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-113, - strand, RNAz p=0.643333
               

               
               177-290, + strand, RNAz p=0.665872

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of CR592155, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of CR592155, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-290, gnl|bosTau2|chrX (40528999-40528710)
               

               
               1-290, gnl|Hg17|chrX (16648106-16647818)
               

               
               1-290, gnl|Mm7|chrX (157534770-157535069)
               


               
               293-1551, gnl|bosTau2|chr2 (73968600-73969855)
               

               
               293-1551, gnl|Hg17|chr1 (32786613-32814398)
               

               
               293-1551, gnl|Mm7|chr4 (128779286-128754740)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-290, gnl|bosTau2|chrX (40528999-40528710)
               

               
               1-290, gnl|Hg17|chrX (16648106-16647818)
               

               
               1-290, gnl|Mm7|chrX (157534770-157535069)
               


               
               293-1551, gnl|bosTau2|chr2 (73968600-73969855)
               

               
               293-1551, gnl|Hg17|chr1 (32786613-32814398)
               

               
               293-1551, gnl|Mm7|chr4 (128779286-128754740)

Expressed library(ies): 57 entry(ies)

More info

Expressed library(ies): 57 entry(ies)

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               ova (1.29132)
               

               
               vin (0.997672)
               

               
               sug (0.763747)
               

               
               thg (0.760746)
               

               
               cbe (0.717703)
               

               
               fty (0.703359)
               

               
               cmu (0.55918)
               

               
               sag (0.548145)
               

               
               eep (0.490256)
               

               
               tbr (0.462535)
               

               
               mgp (0.461361)
               

               
               ski (0.440205)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               tes (0.415628)
               

               
               lyg (0.399308)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               sto (0.359648)
               

               
               gul (0.355177)
               

               
               fbs (0.350693)
               

               
               spc (0.340097)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 57 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (1.29132)
               

               
               vin (0.997672)
               

               
               sug (0.763747)
               

               
               thg (0.760746)
               

               
               cbe (0.717703)
               

               
               fty (0.703359)
               

               
               cmu (0.55918)
               

               
               sag (0.548145)
               

               
               eep (0.490256)
               

               
               tbr (0.462535)
               

               
               mgp (0.461361)
               

               
               ski (0.440205)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               tes (0.415628)
               

               
               lyg (0.399308)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               sto (0.359648)
               

               
               gul (0.355177)
               

               
               fbs (0.350693)
               

               
               spc (0.340097)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	1-113, - strand, RNAz p=0.643333
	177-290, + strand, RNAz p=0.665872

	1-290, gnl\|bosTau2\|chrX (40528999-40528710)
	1-290, gnl\|Hg17\|chrX (16648106-16647818)
	1-290, gnl\|Mm7\|chrX (157534770-157535069)

	293-1551, gnl\|bosTau2\|chr2 (73968600-73969855)
	293-1551, gnl\|Hg17\|chr1 (32786613-32814398)
	293-1551, gnl\|Mm7\|chr4 (128779286-128754740)

	ova (1.29132)
	vin (0.997672)
	sug (0.763747)
	thg (0.760746)
	cbe (0.717703)
	fty (0.703359)
	cmu (0.55918)
	sag (0.548145)
	eep (0.490256)
	tbr (0.462535)
	mgp (0.461361)
	ski (0.440205)
	lin (0.436808)
	spl (0.429553)
	tes (0.415628)
	lyg (0.399308)
	aor (0.390549)
	ret (0.3862)
	elu (0.385356)
	sto (0.359648)
	gul (0.355177)
	fbs (0.350693)
	spc (0.340097)
	cki (0.330469)
	sme (0.305437)
	fat (0.294855)
	cte (0.29274)
	liv (0.292569)
	kid (0.259471)
	bla (0.248694)
	pgl (0.236967)
	pan (0.23596)
	ece (0.229305)
	fcc (0.197785)
	eje (0.197668)
	nep (0.183925)
	rec (0.17307)
	duo (0.172801)
	mga (0.160205)
	fco (0.157208)
	lun (0.150489)
	bfe (0.149858)
	csk (0.140746)
	hlv (0.139256)
	che (0.136314)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	tra (0.123092)
	cly (0.120642)
	med (0.116252)
	ecc (0.115035)
	cbl (0.114797)
	cty (0.10408)
	nbm (0.0993246)
	jej (0.0989218)
	ldo (0.0970026)