Ss1.1-rcmu32_i14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGGGAGGGGCTGGCCCGCTGGCCCTGGCGATCTTTAAATTCTCCTGCTCTTAGGCAGC TTGTGCACTCTTACCTGTTTGCAACGAGTGCCCCACCGTTTTGCTCTCCCAAGGACTCCA GTCCACTACTTTAGGCGGGAAATGCAGTTGCTTGATAGCAACCCAGAGGTAGATATTCTG AAGCAACTGCTAGAGACGGGGGCCTCCGTCAACGCACCTCCGGATCCCTGTGAGCAGTCG CCTGTCCACCTGGCTGCAGGTGGCGGCCTTTCTTGCTTTCTTCTTTGGCAACTGCAGACT GGCGCTGACCTCAACCAACAGGATGTTTTTGGAGAAGCTCCACTACACAAGGCAGCAAAA GTTGGAAGCATGGAGTGCCTCAGCCTGCTTGTAGCCAGTGATGCTCAAATTGATTTATGT AATAAGAATGGGCAAACAGCTGAAGATCTTGCGTGGTCATGTGGATTTCCAGAATGTGCC AAGTTTCTTACAACAATTAAATGTATGCAGACAATAAAGTCAAGTGAACAATCAAATATA GGTCATTGTGTTCCAGCGCTCAGACAGAAACGAAATTTTGAAAGTGAAGAAAATACAAAT GGGAAAAGGAAGTGTTGATGTTGTATTGGTTATGAAGAGGTATGGAGAAAGTCTTCATGA AGGTCTACCGCCCAGCTATAAACCATGGCTTTTGGTTCATCAAGTGTGTCTCAACTTCTT CTAAGAAGGAGGAAAACTTTCTTCTAAGTGAAGATAACATTCAAGAATACATGTATTTAC ATGCCTATAATGTTCTGGTTGTGCATGCTTTGTCTTTTAATTTATTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGGGAGGGGCTGGCCCGCTGGCCCTGGCGATCTTTAAATTCTCCTGCTCTTAGGCAGC TTGTGCACTCTTACCTGTTTGCAACGAGTGCCCCACCGTTTTGCTCTCCCAAGGACTCCA GTCCACTACTTTAGGCGGGAAATGCAGTTGCTTGATAGCAACCCAGAGGTAGATATTCTG AAGCAACTGCTAGAGACGGGGGCCTCCGTCAACGCACCTCCGGATCCCTGTGAGCAGTCG CCTGTCCACCTGGCTGCAGGTGGCGGCCTTTCTTGCTTTCTTCTTTGGCAACTGCAGACT GGCGCTGACCTCAACCAACAGGATGTTTTTGGAGAAGCTCCACTACACAAGGCAGCAAAA GTTGGAAGCATGGAGTGCCTCAGCCTGCTTGTAGCCAGTGATGCTCAAATTGATTTATGT AATAAGAATGGGCAAACAGCTGAAGATCTTGCGTGGTCATGTGGATTTCCAGAATGTGCC AAGTTTCTTACAACAATTAAATGTATGCAGACAATAAAGTCAAGTGAACAATCAAATATA GGTCATTGTGTTCCAGCGCTCAGACAGAAACGAAATTTTGAAAGTGAAGAAAATACAAAT GGGAAAAGGAAGTGTTGATGTTGTATTGGTTATGAAGAGGTATGGAGAAAGTCTTCATGA AGGTCTACCGCCCAGCTATAAACCATGGCTTTTGGTTCATCAAGTGTGTCTCAACTTCTT CTAAGAAGGAGGAAAACTTTCTTCTAAGTGAAGATAACATTCAAGAATACATGTATTTAC ATGCCTATAATGTTCTGGTTGTGCATGCTTTGTCTTTTAATTTATTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 652-765, + strand, RNAz p=0.971653 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 652-765, + strand, RNAz p=0.971653 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_181726, + |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 167-322, gnl|bosTau2|chr27 (9501384-9501229) | |
| 167-322, gnl|canFam2|chr16 (48193414-48193256) | |
| 167-322, gnl|echTel1|scaffold_322353 (4994-4839) | |
| 167-322, gnl|hg17|chr4 (186693434-186693589) | |
| 167-322, gnl|Hg17|chr4 (186693451-186693606) | |
| 167-322, gnl|loxAfr1|scaffold_3469 (60069-59954) | |
| 167-322, gnl|mm7|chr8 (44777287-44777132) | |
| 167-322, gnl|Mm7|chr8 (44777268-44777113) | |
| 167-322, gnl|monDom2|scaffold_9 (67706679-67706857) | |
| 167-322, gnl|oryCun1|scaffold_198125 (78114-78269) | |
| 167-322, gnl|panTro1|chr3 (204900138-204900293) | |
| 167-322, gnl|rn3|chr16 (49549886-49550041) | |
| 167-322, gnl|xenTro1|scaffold_99 (2162994-2163143) | |
| 414-617, gnl|bosTau2|chr27 (9499803-9499600) | |
| 414-617, gnl|Hg17|chr4 (186695873-186696076) | |
| 414-617, gnl|Mm7|chr8 (44775683-44775477) | |
| 622-828, gnl|bosTau2|chr27 (9499349-9499138) | |
| 622-828, gnl|canFam2|chr16 (48190732-48190483) | |
| 622-828, gnl|dasNov1|scaffold_172405 (1790-2012) | |
| 622-828, gnl|echTel1|scaffold_322353 (1480-1277) | |
| 622-828, gnl|hg17|chr4 (186696286-186696527) | |
| 622-828, gnl|Hg17|chr4 (186696321-186696528) | |
| 622-828, gnl|loxAfr1|scaffold_3469 (57453-57235) | |
| 622-828, gnl|mm7|chr8 (44775046-44774790) | |
| 622-828, gnl|Mm7|chr8 (44774987-44774787) | |
| 622-828, gnl|monDom2|scaffold_9 (67710351-67710652) | |
| 622-828, gnl|oryCun1|scaffold_198125 (80373-80608) | |
| 622-828, gnl|panTro1|chr3 (204902977-204903218) | |
| 622-828, gnl|rn3|chr16 (49552229-49552477) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 167-322, gnl|bosTau2|chr27 (9501384-9501229) | |
| 167-322, gnl|canFam2|chr16 (48193414-48193256) | |
| 167-322, gnl|echTel1|scaffold_322353 (4994-4839) | |
| 167-322, gnl|hg17|chr4 (186693434-186693589) | |
| 167-322, gnl|Hg17|chr4 (186693451-186693606) | |
| 167-322, gnl|loxAfr1|scaffold_3469 (60069-59954) | |
| 167-322, gnl|mm7|chr8 (44777287-44777132) | |
| 167-322, gnl|Mm7|chr8 (44777268-44777113) | |
| 167-322, gnl|monDom2|scaffold_9 (67706679-67706857) | |
| 167-322, gnl|oryCun1|scaffold_198125 (78114-78269) | |
| 167-322, gnl|panTro1|chr3 (204900138-204900293) | |
| 167-322, gnl|rn3|chr16 (49549886-49550041) | |
| 167-322, gnl|xenTro1|scaffold_99 (2162994-2163143) | |
| 414-617, gnl|bosTau2|chr27 (9499803-9499600) | |
| 414-617, gnl|Hg17|chr4 (186695873-186696076) | |
| 414-617, gnl|Mm7|chr8 (44775683-44775477) | |
| 622-828, gnl|bosTau2|chr27 (9499349-9499138) | |
| 622-828, gnl|canFam2|chr16 (48190732-48190483) | |
| 622-828, gnl|dasNov1|scaffold_172405 (1790-2012) | |
| 622-828, gnl|echTel1|scaffold_322353 (1480-1277) | |
| 622-828, gnl|hg17|chr4 (186696286-186696527) | |
| 622-828, gnl|Hg17|chr4 (186696321-186696528) | |
| 622-828, gnl|loxAfr1|scaffold_3469 (57453-57235) | |
| 622-828, gnl|mm7|chr8 (44775046-44774790) | |
| 622-828, gnl|Mm7|chr8 (44774987-44774787) | |
| 622-828, gnl|monDom2|scaffold_9 (67710351-67710652) | |
| 622-828, gnl|oryCun1|scaffold_198125 (80373-80608) | |
| 622-828, gnl|panTro1|chr3 (204902977-204903218) | |
| 622-828, gnl|rn3|chr16 (49552229-49552477) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| thg (0.253582) | |
| cmu (0.186393) | |
| lin (0.145603) | |
| csk (0.140746) | |
| eep (0.122564) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.253582) | |
| cmu (0.186393) | |
| lin (0.145603) | |
| csk (0.140746) | |
| eep (0.122564) | |
| jej (0.0989218) | |
| eje (0.0988338) |