Non-Coding RNA Search

Ss1.1-rcmu32_i23.5

Sequence:


               
               TTTTTTTCTTAGTGGATGGGCACTGGAGCATCTTGGGGTGAGCACTCATGTTGCTCTGGA
AGCCTGCTCCCCATGGTCAGGGTACTTTTTATTCCTCTTCCCTCCACCTGTGTGAACACC
CCTATACTACCACCTCAGTATAGACCGGACCTTTTGGAAGCCTCTCTCCCCAAAGCCACT
CAGGTAGAGCCCAGGGAGTGACAAAGAATCTGGAAGGGAAAACAATGCAGAAAAGCCCTG
TAAATGAACTATTGAAGTATTTGGACTTTTTCTCCAGCTGTAAAGCATAGTGTGTATATG
TACAAATGTATATTTTTTCATGCTTTTAAAAAAAGAAGTTAGCTTTGTGAGAAGATCTTG
TTTGGTAAGTGACTTTACTATGTAATAGGACCACACTGTATCTTGTTATCCAGTAACACA
GTAAGGCAGGTCAGCTTTTCTTTCCTCTTTGAATCTGGCTAGTTTTGGAGGGGCCTGGGT
TTATTGATAGGACGTAGGGTATCAATCCTTTTACACTGCTTAGAGTCTGCAGTGTGGGCA
GTGCAGTGTTGAAGTCAGATGATTTTAGGAGTCAGGACCAAACTGCCAGTATACTCCTTG
GCTCTTAAAAGAAAATAAAATGGAAGCTGTTTATTTCATGGCTTCCCTTTTATCATGTAG
TAATCTTATTACAATTCTAGATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTCTTAGTGGATGGGCACTGGAGCATCTTGGGGTGAGCACTCATGTTGCTCTGGA
AGCCTGCTCCCCATGGTCAGGGTACTTTTTATTCCTCTTCCCTCCACCTGTGTGAACACC
CCTATACTACCACCTCAGTATAGACCGGACCTTTTGGAAGCCTCTCTCCCCAAAGCCACT
CAGGTAGAGCCCAGGGAGTGACAAAGAATCTGGAAGGGAAAACAATGCAGAAAAGCCCTG
TAAATGAACTATTGAAGTATTTGGACTTTTTCTCCAGCTGTAAAGCATAGTGTGTATATG
TACAAATGTATATTTTTTCATGCTTTTAAAAAAAGAAGTTAGCTTTGTGAGAAGATCTTG
TTTGGTAAGTGACTTTACTATGTAATAGGACCACACTGTATCTTGTTATCCAGTAACACA
GTAAGGCAGGTCAGCTTTTCTTTCCTCTTTGAATCTGGCTAGTTTTGGAGGGGCCTGGGT
TTATTGATAGGACGTAGGGTATCAATCCTTTTACACTGCTTAGAGTCTGCAGTGTGGGCA
GTGCAGTGTTGAAGTCAGATGATTTTAGGAGTCAGGACCAAACTGCCAGTATACTCCTTG
GCTCTTAAAAGAAAATAAAATGGAAGCTGTTTATTTCATGGCTTCCCTTTTATCATGTAG
TAATCTTATTACAATTCTAGATTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               449-684, + strand, RNAz p=0.98842

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               449-684, + strand, RNAz p=0.98842

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               463-680, AM019186 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007419l24 
(emb|AM019186.1|), blast E-value=5.60519e-45, identity=86.94% 
               

               
               463-680, 167830 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb|BE482153.1|), 
blast E-value=0, identity=87.39% 
               

               
               458-684, CT02032B2F05 Equine Articular Cartilage cDNA Library Equus caballus 
(gb|CX602501.1|), blast E-value=1.4013e-45, identity=86.4% 
               

               
               463-680, 1247669 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN511714.1|), 
blast E-value=0, identity=87.39% 
               

               
               463-680, 1248437 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN512394.1|), 
blast E-value=0, identity=87.39% 
               

               
               463-680, 1577840 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY456535.1|), 
blast E-value=0, identity=87.39%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               463-680, AM019186 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007419l24 
(emb|AM019186.1|), blast E-value=5.60519e-45, identity=86.94% 
               

               
               463-680, 167830 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb|BE482153.1|), 
blast E-value=0, identity=87.39% 
               

               
               458-684, CT02032B2F05 Equine Articular Cartilage cDNA Library Equus caballus 
(gb|CX602501.1|), blast E-value=1.4013e-45, identity=86.4% 
               

               
               463-680, 1247669 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN511714.1|), 
blast E-value=0, identity=87.39% 
               

               
               463-680, 1248437 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN512394.1|), 
blast E-value=0, identity=87.39% 
               

               
               463-680, 1577840 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY456535.1|), 
blast E-value=0, identity=87.39%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017748, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017748, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               183-684, gnl|bosTau2|chr19 (35840728-35840214)
               

               
               183-684, gnl|Hg17|chr17 (34211407-34210920)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               183-684, gnl|bosTau2|chr19 (35840728-35840214)
               

               
               183-684, gnl|Hg17|chr17 (34211407-34210920)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               csp (0.161186)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               csp (0.161186)

	463-680, AM019186 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007419l24 (emb\|AM019186.1\|), blast E-value=5.60519e-45, identity=86.94%
	463-680, 167830 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE482153.1\|), blast E-value=0, identity=87.39%
	458-684, CT02032B2F05 Equine Articular Cartilage cDNA Library Equus caballus (gb\|CX602501.1\|), blast E-value=1.4013e-45, identity=86.4%
	463-680, 1247669 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN511714.1\|), blast E-value=0, identity=87.39%
	463-680, 1248437 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN512394.1\|), blast E-value=0, identity=87.39%
	463-680, 1577840 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb\|DY456535.1\|), blast E-value=0, identity=87.39%

	183-684, gnl\|bosTau2\|chr19 (35840728-35840214)
	183-684, gnl\|Hg17\|chr17 (34211407-34210920)