Non-Coding RNA Search

Ss1.1-rcmu33_m2.5

Sequence:


               
               GCCAGGGCTTGAATCCCAATGCTCTAATACTTAGCCAAAAGTAAGAAAGCTTAGAATTCT
AGAATAGTGATCCTTGAAGATATTTTAGTAGACAGCTGAATCACAATCACTTGGCTTATT
TTTCAAAATAAAGGTTACTGAGCTCTGCCATTCTAGATACTATATATACTTCTCATAAAA
TATTTGAGGGAAGTGAGGAGTCTGATGAGGTTAAGGGTGTAAAAAAAAAAAGACAGTATT
TCAGAAAGGTAAATTGGCAGATATATAAGCTCAAACATGAGAATGAATATCACAGTTAAG
AAACCATAAGCACTTGTACTTGACTGAGAAAAAGTGAAACCTCCATTAAGTTCTGATAGA
AATGAGAGCATAATACTACTATTAAGAAAGAAAGTCCTTGGAGAAGAAAATATAGAAAAT
TTGTAGTCATAAAGATACAATATAACAAAAAACTAGTCTGGATTACGGCACCATGATATA
AAATTCTTAAAATAGAAGGAGCAGATCTGGGACTATTTCAGAGAAAAGATTGCTGGAATG
TTAATCTATCAACATTTTATAAAGGTTTTTTTTTTTTTTAACAAAACATAGATAAAAACA
TTCTATGTAGTAGTAATGATGGTTTAGGCCTTAAACACAGCTAGTTAGTTCCCTATACTT
TACTCTAAACATAAAACGTCTAACTAGATATGTTTTACTCTAAAATAGAATTATGAGCTG
TCAGGAAAATAAGAAGAGTGGTGCTGGGAGCAGGGGCAGGTGAGCCATGTAGAACAGCCC
ATTAGAATGACCCATTTCACTTTAGAAATAGAAACTAGCGATTTTAAATCAAATAGGTGA
TATTTATAGGACAATAGGAATTAATTTTATATTTCTCAACCTTTTTTTCGAGGTAATACT
CTACCTAAATACTATGTTTCTCACCTTAACTTTTGCCAATATTGCCTCGAGAGTTGACTA
TCATCGTACTTCAGAAATGAGACCAATCTAGAAATTTTTCTTTTTTTAACTCTCTTATCT
CTAAATGTGTTCATTTTTACTTCTTCAGCTTTTGTTCAATAAATCATTTTGAAAAGCAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGGGCTTGAATCCCAATGCTCTAATACTTAGCCAAAAGTAAGAAAGCTTAGAATTCT
AGAATAGTGATCCTTGAAGATATTTTAGTAGACAGCTGAATCACAATCACTTGGCTTATT
TTTCAAAATAAAGGTTACTGAGCTCTGCCATTCTAGATACTATATATACTTCTCATAAAA
TATTTGAGGGAAGTGAGGAGTCTGATGAGGTTAAGGGTGTAAAAAAAAAAAGACAGTATT
TCAGAAAGGTAAATTGGCAGATATATAAGCTCAAACATGAGAATGAATATCACAGTTAAG
AAACCATAAGCACTTGTACTTGACTGAGAAAAAGTGAAACCTCCATTAAGTTCTGATAGA
AATGAGAGCATAATACTACTATTAAGAAAGAAAGTCCTTGGAGAAGAAAATATAGAAAAT
TTGTAGTCATAAAGATACAATATAACAAAAAACTAGTCTGGATTACGGCACCATGATATA
AAATTCTTAAAATAGAAGGAGCAGATCTGGGACTATTTCAGAGAAAAGATTGCTGGAATG
TTAATCTATCAACATTTTATAAAGGTTTTTTTTTTTTTTAACAAAACATAGATAAAAACA
TTCTATGTAGTAGTAATGATGGTTTAGGCCTTAAACACAGCTAGTTAGTTCCCTATACTT
TACTCTAAACATAAAACGTCTAACTAGATATGTTTTACTCTAAAATAGAATTATGAGCTG
TCAGGAAAATAAGAAGAGTGGTGCTGGGAGCAGGGGCAGGTGAGCCATGTAGAACAGCCC
ATTAGAATGACCCATTTCACTTTAGAAATAGAAACTAGCGATTTTAAATCAAATAGGTGA
TATTTATAGGACAATAGGAATTAATTTTATATTTCTCAACCTTTTTTTCGAGGTAATACT
CTACCTAAATACTATGTTTCTCACCTTAACTTTTGCCAATATTGCCTCGAGAGTTGACTA
TCATCGTACTTCAGAAATGAGACCAATCTAGAAATTTTTCTTTTTTTAACTCTCTTATCT
CTAAATGTGTTCATTTTTACTTCTTCAGCTTTTGTTCAATAAATCATTTTGAAAAGCAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               150-483, gnl|bosTau2|chr6 (45891779-45891439)
               

               
               150-483, gnl|Hg17|chr4 (71348299-71348681)
               


               
               494-1078, gnl|bosTau2|chr6 (45891034-45890457)
               

               
               494-1078, gnl|Mm7|chr5 (87902552-87903061)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-483, gnl|bosTau2|chr6 (45891779-45891439)
               

               
               150-483, gnl|Hg17|chr4 (71348299-71348681)
               


               
               494-1078, gnl|bosTau2|chr6 (45891034-45890457)
               

               
               494-1078, gnl|Mm7|chr5 (87902552-87903061)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               cmu (60.205)
               

               
               nmm (0.929615)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (60.205)
               

               
               nmm (0.929615)

	150-483, gnl\|bosTau2\|chr6 (45891779-45891439)
	150-483, gnl\|Hg17\|chr4 (71348299-71348681)

	494-1078, gnl\|bosTau2\|chr6 (45891034-45890457)
	494-1078, gnl\|Mm7\|chr5 (87902552-87903061)