Non-Coding RNA Search

Ss1.1-rcmu34_c1.5

Sequence:


               
               CTCATTCTGAGCCTACTGCAGAAGAATCTTCAGCTGCAGCACCATGAACCAAAGTGCTGT
TCTTATTTTCTGCCTTATTCTTCTGACTCTGAGTGGAACTCAAGGAATACCTCTCTCCAG
AACTGTTCGCTGTACCTGCATCAAGATCAGTGACAGACCTGTTAATCCGAGGTCCTTAGA
AAAACTTGAAATGATTCCTGCAAGTCAATCTTGCCCACATGTTGAGATCATTGCCACAAT
GAAAAAGAATGGGGAGAAAAGATGTCTGAATCCAGAGTCTAAGACCATCAAGAATTTACT
GAAAGCAATTAGCAAAGAAAGGTCTAAAAGATCTCCTCGAACACAGAGAGAAGCATAATC
ACGGCACTACTGATAAGGATGGGCCGGAGAGAATCTACCTCTGCCATCATCTCTCTACAT
ACACCATACATCAAGCCCTAACTGTCCATGGATTGCAGTCACCAAGTTAGCTGCTCCCAC
ACTTGCAGGGCAGCAGATGGTTCATCATCCCGAGCTGTTGAGCAGTAACTCTGCCCAGGC
ACTATACTATAAGCTACACTGAGGTGCTACATTCTTAGTGAATGTGCCAAGTCCTGGCCC
TGCTACTGACACTTTCCTCACCTTTCCTATCGTCTGGTTATTAAGGGATCATTCCACTTT
GGGACTTAATCGAAGTTCTTAGAATCTCAAATAACCAAGAGGTATTTAAAACAATAATAA
AACCTGCTTTTTAAAGAAAGATCTTTACTCCGTGGGCTTCTACTGCTTTCCTTCCAAGGG
GCCCATATTCTCTTGGTGATTACATACATAATTCTAAATACACAGGAGAAGCTAGAAATA
CCTGAAAATGTATATGAAAATAGTATTATTTAGTGAAAGACTATATAAAGTAGGATTCTT
AGATGTATATGTTTCTTATAGTTTTCAGTGTTTATGGAATACCTTGTAAAAGTATGTACT
ACAATGAGATAAATTTTTAAATGTGGATACATGTTCTGCATGTTATGTAAGACAAATACG
CTGAGTGGGTGCTCTTCAAAATAAAACTAATGTTCTCTCCTAGAAACATTAAGAAAGACT
AACTGTTCAGACAAAAAAGGTAATAAAGTTACTATAAGATGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATTCTGAGCCTACTGCAGAAGAATCTTCAGCTGCAGCACCATGAACCAAAGTGCTGT
TCTTATTTTCTGCCTTATTCTTCTGACTCTGAGTGGAACTCAAGGAATACCTCTCTCCAG
AACTGTTCGCTGTACCTGCATCAAGATCAGTGACAGACCTGTTAATCCGAGGTCCTTAGA
AAAACTTGAAATGATTCCTGCAAGTCAATCTTGCCCACATGTTGAGATCATTGCCACAAT
GAAAAAGAATGGGGAGAAAAGATGTCTGAATCCAGAGTCTAAGACCATCAAGAATTTACT
GAAAGCAATTAGCAAAGAAAGGTCTAAAAGATCTCCTCGAACACAGAGAGAAGCATAATC
ACGGCACTACTGATAAGGATGGGCCGGAGAGAATCTACCTCTGCCATCATCTCTCTACAT
ACACCATACATCAAGCCCTAACTGTCCATGGATTGCAGTCACCAAGTTAGCTGCTCCCAC
ACTTGCAGGGCAGCAGATGGTTCATCATCCCGAGCTGTTGAGCAGTAACTCTGCCCAGGC
ACTATACTATAAGCTACACTGAGGTGCTACATTCTTAGTGAATGTGCCAAGTCCTGGCCC
TGCTACTGACACTTTCCTCACCTTTCCTATCGTCTGGTTATTAAGGGATCATTCCACTTT
GGGACTTAATCGAAGTTCTTAGAATCTCAAATAACCAAGAGGTATTTAAAACAATAATAA
AACCTGCTTTTTAAAGAAAGATCTTTACTCCGTGGGCTTCTACTGCTTTCCTTCCAAGGG
GCCCATATTCTCTTGGTGATTACATACATAATTCTAAATACACAGGAGAAGCTAGAAATA
CCTGAAAATGTATATGAAAATAGTATTATTTAGTGAAAGACTATATAAAGTAGGATTCTT
AGATGTATATGTTTCTTATAGTTTTCAGTGTTTATGGAATACCTTGTAAAAGTATGTACT
ACAATGAGATAAATTTTTAAATGTGGATACATGTTCTGCATGTTATGTAAGACAAATACG
CTGAGTGGGTGCTCTTCAAAATAAAACTAATGTTCTCTCCTAGAAACATTAAGAAAGACT
AACTGTTCAGACAAAAAAGGTAATAAAGTTACTATAAGATGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|56711368|ref|NP_001008691.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|56711368|ref|NP_001008691.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               692-810, + strand, RNAz p=0.961424

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               692-810, + strand, RNAz p=0.961424

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_001565, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001565, +

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               103-231, gnl|bosTau2|chr6 (50125744-50125872)
               

               
               103-231, gnl|canFam2|chr32 (3563487-3563896)
               

               
               103-231, gnl|dasNov1|scaffold_14972 (43493-43081)
               

               
               103-231, gnl|echTel1|scaffold_316899 (42119-42515)
               

               
               103-231, gnl|hg17|chr4 (77301007-77301420)
               

               
               103-231, gnl|Hg17|chr4 (77301151-77301023)
               

               
               103-231, gnl|loxAfr1|scaffold_11058 (12034-12461)
               

               
               103-231, gnl|mm7|chr5 (92335320-92335709)
               

               
               103-231, gnl|Mm7|chr5 (92335464-92335336)
               

               
               103-231, gnl|monDom2|scaffold_32 (29339246-29339638)
               

               
               103-231, gnl|oryCun1|scaffold_62739 (1668-2082)
               

               
               103-231, gnl|panTro1|chr3 (56424447-56424034)
               

               
               103-231, gnl|rheMac2|chr5 (53564555-53564140)
               

               
               103-231, gnl|rn3|chr14 (17266777-17266390)
               


               
               456-1117, gnl|bosTau2|chr6 (50126770-50127450)
               

               
               456-1117, gnl|Hg17|chr4 (77300120-77299454)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-231, gnl|bosTau2|chr6 (50125744-50125872)
               

               
               103-231, gnl|canFam2|chr32 (3563487-3563896)
               

               
               103-231, gnl|dasNov1|scaffold_14972 (43493-43081)
               

               
               103-231, gnl|echTel1|scaffold_316899 (42119-42515)
               

               
               103-231, gnl|hg17|chr4 (77301007-77301420)
               

               
               103-231, gnl|Hg17|chr4 (77301151-77301023)
               

               
               103-231, gnl|loxAfr1|scaffold_11058 (12034-12461)
               

               
               103-231, gnl|mm7|chr5 (92335320-92335709)
               

               
               103-231, gnl|Mm7|chr5 (92335464-92335336)
               

               
               103-231, gnl|monDom2|scaffold_32 (29339246-29339638)
               

               
               103-231, gnl|oryCun1|scaffold_62739 (1668-2082)
               

               
               103-231, gnl|panTro1|chr3 (56424447-56424034)
               

               
               103-231, gnl|rheMac2|chr5 (53564555-53564140)
               

               
               103-231, gnl|rn3|chr14 (17266777-17266390)
               


               
               456-1117, gnl|bosTau2|chr6 (50126770-50127450)
               

               
               456-1117, gnl|Hg17|chr4 (77300120-77299454)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               lin (1.01922)
               

               
               sin (0.69979)
               

               
               mgp (0.692042)
               

               
               mga (0.480615)
               

               
               thg (0.380373)
               

               
               cmu (0.372787)
               

               
               mgm (0.360685)
               

               
               sto (0.359648)
               

               
               fty (0.351679)
               

               
               nje (0.33184)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               duo (0.172801)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (1.01922)
               

               
               sin (0.69979)
               

               
               mgp (0.692042)
               

               
               mga (0.480615)
               

               
               thg (0.380373)
               

               
               cmu (0.372787)
               

               
               mgm (0.360685)
               

               
               sto (0.359648)
               

               
               fty (0.351679)
               

               
               nje (0.33184)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               duo (0.172801)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	103-231, gnl\|bosTau2\|chr6 (50125744-50125872)
	103-231, gnl\|canFam2\|chr32 (3563487-3563896)
	103-231, gnl\|dasNov1\|scaffold_14972 (43493-43081)
	103-231, gnl\|echTel1\|scaffold_316899 (42119-42515)
	103-231, gnl\|hg17\|chr4 (77301007-77301420)
	103-231, gnl\|Hg17\|chr4 (77301151-77301023)
	103-231, gnl\|loxAfr1\|scaffold_11058 (12034-12461)
	103-231, gnl\|mm7\|chr5 (92335320-92335709)
	103-231, gnl\|Mm7\|chr5 (92335464-92335336)
	103-231, gnl\|monDom2\|scaffold_32 (29339246-29339638)
	103-231, gnl\|oryCun1\|scaffold_62739 (1668-2082)
	103-231, gnl\|panTro1\|chr3 (56424447-56424034)
	103-231, gnl\|rheMac2\|chr5 (53564555-53564140)
	103-231, gnl\|rn3\|chr14 (17266777-17266390)

	456-1117, gnl\|bosTau2\|chr6 (50126770-50127450)
	456-1117, gnl\|Hg17\|chr4 (77300120-77299454)

	lin (1.01922)
	sin (0.69979)
	mgp (0.692042)
	mga (0.480615)
	thg (0.380373)
	cmu (0.372787)
	mgm (0.360685)
	sto (0.359648)
	fty (0.351679)
	nje (0.33184)
	liv (0.292569)
	spl (0.286369)
	csk (0.281492)
	tra (0.246184)
	hea (0.204499)
	jej (0.197844)
	duo (0.172801)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	nmm (0.132802)
	kid (0.129735)
	spc (0.113366)
	cty (0.10408)