Non-Coding RNA Search

Ss1.1-rcmu34_o21.5

Sequence:


               
               GCGGTGTGCTGCCTTCTGGGATTTATGTGCCCAGAGGGAGGGGCACTGAACCTGAAGAAA
CTAGATTAGACTTAACCAAGATCGGCCAAAAATTTCTCTTCCCACTGTTCTATCAATGTG
ACATAGTTCTAGGTTAAGCTCTATATATAGCAGTAAGTTCCTTGCAGCAATAATCATATT
TTTATGACTTGTACTTTTTTCATATTCTTCCTCTGAGGTTTCAGTTTTCATTATATTGTG
TTCAATATTCCACATCTCAGTAAGTTACAGCTAATTACAGGCCTGTGTTCCAGGTTATTA
AAAACAGAGTTTATTAAAAAATCCCAAGTCTAAGGGCTACATTACCTTTCATTTCCTTTG
TGCTGTAAAAACAAATTGAGCTGCAAAACTACATCCCTTAATCTGTTTTTCATTTTCTTG
TCTTAAATTTCTTTGGCTGTGATCCCCTGAGCACTACTTTCATTAAGTGTATTCATTTTT
ACTTCCCCTGTTTCAGATGTTCATTAATTGTGAAATATAATATTTGTTTGATGGCGTTGC
TTCCAAGCTTTGTCACTGTTGCTTTGGTTAATTGTTGCAAAGTGGGTTGTATAGAATGAT
AGGTTTTCATTGATTTAATCTACATCTCTTACAGGTTTAGATATTTTCTGTGACTGGTCA
CATTTTCTAGGCTACATTCATTTTCCTTGTGAAAGTGGTACTGTCTCTCCTCTCATTTCC
ACTGAAACTTTTGAGTAAACCACAGGGAATTATTAGCAGTCATACATTGTCTGAACTCCA
AGGTAGAATCAATGTGGACAGAATGCCTGGTAAATAGTCACTCACATATTTCTGGAATGT
TTTTTATTTCTCTGAATTTTTTTGTTTTTGAAGCCTGGCGGTAATCTTATTAGCATTAAA
AATTATACTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGTGTGCTGCCTTCTGGGATTTATGTGCCCAGAGGGAGGGGCACTGAACCTGAAGAAA
CTAGATTAGACTTAACCAAGATCGGCCAAAAATTTCTCTTCCCACTGTTCTATCAATGTG
ACATAGTTCTAGGTTAAGCTCTATATATAGCAGTAAGTTCCTTGCAGCAATAATCATATT
TTTATGACTTGTACTTTTTTCATATTCTTCCTCTGAGGTTTCAGTTTTCATTATATTGTG
TTCAATATTCCACATCTCAGTAAGTTACAGCTAATTACAGGCCTGTGTTCCAGGTTATTA
AAAACAGAGTTTATTAAAAAATCCCAAGTCTAAGGGCTACATTACCTTTCATTTCCTTTG
TGCTGTAAAAACAAATTGAGCTGCAAAACTACATCCCTTAATCTGTTTTTCATTTTCTTG
TCTTAAATTTCTTTGGCTGTGATCCCCTGAGCACTACTTTCATTAAGTGTATTCATTTTT
ACTTCCCCTGTTTCAGATGTTCATTAATTGTGAAATATAATATTTGTTTGATGGCGTTGC
TTCCAAGCTTTGTCACTGTTGCTTTGGTTAATTGTTGCAAAGTGGGTTGTATAGAATGAT
AGGTTTTCATTGATTTAATCTACATCTCTTACAGGTTTAGATATTTTCTGTGACTGGTCA
CATTTTCTAGGCTACATTCATTTTCCTTGTGAAAGTGGTACTGTCTCTCCTCTCATTTCC
ACTGAAACTTTTGAGTAAACCACAGGGAATTATTAGCAGTCATACATTGTCTGAACTCCA
AGGTAGAATCAATGTGGACAGAATGCCTGGTAAATAGTCACTCACATATTTCTGGAATGT
TTTTTATTTCTCTGAATTTTTTTGTTTTTGAAGCCTGGCGGTAATCTTATTAGCATTAAA
AATTATACTGGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               402-508, + strand, RNAz p=0.627372

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               402-508, + strand, RNAz p=0.627372

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               5-648, gnl|bosTau2|chr17 (35941108-35941742)
               

               
               5-648, gnl|canFam2|chr26 (20253942-20253377)
               

               
               5-648, gnl|dasNov1|scaffold_5950 (42109-42665)
               

               
               5-648, gnl|hg17|chr12 (108817985-108818537)
               

               
               5-648, gnl|Hg17|chr12 (108818070-108818708)
               

               
               5-648, gnl|loxAfr1|scaffold_5024 (5221-5745)
               

               
               5-648, gnl|mm7|chr5 (113942653-113943104)
               

               
               5-648, gnl|panTro1|chr10 (111414801-111415351)
               

               
               5-648, gnl|rheMac2|chr11 (110831801-110832351)
               

               
               5-648, gnl|rn3|chr12 (43029867-43029445)
               


               
               677-900, gnl|bosTau2|chr17 (35941740-35941962)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-648, gnl|bosTau2|chr17 (35941108-35941742)
               

               
               5-648, gnl|canFam2|chr26 (20253942-20253377)
               

               
               5-648, gnl|dasNov1|scaffold_5950 (42109-42665)
               

               
               5-648, gnl|hg17|chr12 (108817985-108818537)
               

               
               5-648, gnl|Hg17|chr12 (108818070-108818708)
               

               
               5-648, gnl|loxAfr1|scaffold_5024 (5221-5745)
               

               
               5-648, gnl|mm7|chr5 (113942653-113943104)
               

               
               5-648, gnl|panTro1|chr10 (111414801-111415351)
               

               
               5-648, gnl|rheMac2|chr11 (110831801-110832351)
               

               
               5-648, gnl|rn3|chr12 (43029867-43029445)
               


               
               677-900, gnl|bosTau2|chr17 (35941740-35941962)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	5-648, gnl\|bosTau2\|chr17 (35941108-35941742)
	5-648, gnl\|canFam2\|chr26 (20253942-20253377)
	5-648, gnl\|dasNov1\|scaffold_5950 (42109-42665)
	5-648, gnl\|hg17\|chr12 (108817985-108818537)
	5-648, gnl\|Hg17\|chr12 (108818070-108818708)
	5-648, gnl\|loxAfr1\|scaffold_5024 (5221-5745)
	5-648, gnl\|mm7\|chr5 (113942653-113943104)
	5-648, gnl\|panTro1\|chr10 (111414801-111415351)
	5-648, gnl\|rheMac2\|chr11 (110831801-110832351)
	5-648, gnl\|rn3\|chr12 (43029867-43029445)

	677-900, gnl\|bosTau2\|chr17 (35941740-35941962)