Non-Coding RNA Search

Ss1.1-rcmu36_l5.5

Sequence:


               
               GTTCCCACTACAACTCTATCACTTTCCATCACAGAAGCTGAAATAACTGCCACTGATGGT
GAGGTCACTACTGACTCAGCAGATGCTACTACTCTTCCTGCCACAAGTATGGCAGCTACC
ACAACTCCTGCAGAGTCCACAGAACCTTCTGTAGTTTCCACAGCTGCAACAGATACTACC
ACTCCACCTCCTGAAGGAACCTCTACTGCCACAGCCATCACAGCAGGAACCACAACCAAC
ACATCTGAAACTGATGCTATCACCACTGCCCCAGTAGCAACCTCTGGTCCTACAACTACA
GTGGCCATCAATACAGCCTCCACTGAAACCACTACTGCTGCTGACGGTGGCACAGAAGCA
CCATCTGTTACCACAACCACAGAAAATTCACCTACAACTGGCGAGAACCCTCCTTTTACA
CTGTAAAAGCAATATAGCAGCATGTCTCAAGCACCTGGATAACAGGTAAATTACTGCATG
CAAATAACGAAATGAAGAAATTCAGTAGTGTTCTATATATTTCTAAATAGCTTATGTTAT
GGCTCGTTACTCTTGATCTGCCCCAACTCTTTGCAATTCTATAAAAAAAAAGCAGATATT
CTCCCATTTTACAAATAGGATACAGAGTTGTGGGATTTGCTCAAATTCAGAACACATGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCCACTACAACTCTATCACTTTCCATCACAGAAGCTGAAATAACTGCCACTGATGGT
GAGGTCACTACTGACTCAGCAGATGCTACTACTCTTCCTGCCACAAGTATGGCAGCTACC
ACAACTCCTGCAGAGTCCACAGAACCTTCTGTAGTTTCCACAGCTGCAACAGATACTACC
ACTCCACCTCCTGAAGGAACCTCTACTGCCACAGCCATCACAGCAGGAACCACAACCAAC
ACATCTGAAACTGATGCTATCACCACTGCCCCAGTAGCAACCTCTGGTCCTACAACTACA
GTGGCCATCAATACAGCCTCCACTGAAACCACTACTGCTGCTGACGGTGGCACAGAAGCA
CCATCTGTTACCACAACCACAGAAAATTCACCTACAACTGGCGAGAACCCTCCTTTTACA
CTGTAAAAGCAATATAGCAGCATGTCTCAAGCACCTGGATAACAGGTAAATTACTGCATG
CAAATAACGAAATGAAGAAATTCAGTAGTGTTCTATATATTTCTAAATAGCTTATGTTAT
GGCTCGTTACTCTTGATCTGCCCCAACTCTTTGCAATTCTATAAAAAAAAAGCAGATATT
CTCCCATTTTACAAATAGGATACAGAGTTGTGGGATTTGCTCAAATTCAGAACACATGGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               214-373, - strand, RNAz p=0.999631

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               214-373, - strand, RNAz p=0.999631

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               177-656, gnl|bosTau2|chr6 (45892639-45892172)
               

               
               177-656, gnl|Hg17|chr4 (71347425-71347853)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-656, gnl|bosTau2|chr6 (45892639-45892172)
               

               
               177-656, gnl|Hg17|chr4 (71347425-71347853)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cmu (0.745573)
               

               
               nmm (0.265604)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.745573)
               

               
               nmm (0.265604)

	177-656, gnl\|bosTau2\|chr6 (45892639-45892172)
	177-656, gnl\|Hg17\|chr4 (71347425-71347853)