Ss1.1-rcmu36_o5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCCTATGTCTCAGGCTCAGCCCCAGCCTCAGCCCCAGCCCCAGTCCCAGCCACAGCCA CAGCCACAGGCCCAGACCCAGGCCCAGTGCCAGTCCCAGTCCCAACCAGCACTCCAGCCC CAGCCTCTCTCTCAGCCTGAGACTATGCCCTTAGCTGTTTTACAGCCACCACCTCAGGCT ATTCAGGAGCAAGGGCATTTACCACCTGAGAGAAAGGAGTTTCCTGTAGAATCTGCAAAA CTGACTGAGGTGACAGTAGAGCCAGTCTTGACAGTACATCCAGAGAGCAAGAGCAAAACC AAAACTAGGAGCAGAAGTAGAGGTCGAGCTAGAAATAAAACAAGCAAGAGCAGAAGTCGA AGCAGTAGCAGTAGTAGTTCTAGTAGCAGTTCAACCAGTAGCAGCAGTGGAAGCAGTTCT AGCAGTGGCAGTAGTAGTAGTCGAAGTAGTTCCAGTAGCAGCTCCAGTACAAGTGGCAGC AGCAGTAGAGACAGTAGCAGCAGCACTACCAGTAGTAGTGAGAGTAGAAGTCGAAGTAGG GGCCGGGGACATAACAGAGATAGAAAACACAGGAGGAGTGTGGATCGGAAGCGGAGGGAT GCTTCTGGACTAGAAAGAAGTCACAAATCTTCAAAAGGTGGTAGTAGTAGAGATACAAAA GGATCAAAGGATAAGAATTCCCGGTCTGACAGAAAGAGGTCTATATCAGAGAGTAGTCGA TCAGGCAAAAGATCCTCAAGAAGTGAAAGAGACCGAAAATCAGACAGGAAAGACAAAAGG CGTTAATGGAAGAAGCCAGGCTTTCTTAGCCTATTCTTGCAGCAGAAGATTTCTTGATGA GTAAAAGGATTACCTTTCCTTGTAAGGAGAATGCTGCCTTAAGAATTGCATGTTGTAAAA ATTTTTTTGGAAAATACAGACTGTTTGTTTACCAGACATTCTTGTACTTTTGCATAATTT TGTAAGAGTTATTTATCAAAATTATGTGAGGTTCCAAAATATGTAAAAATAATAATAATA AAAAAAGATTAACATCCCTTGTCATCTTTTTTAAATATCCTATACTCTTCAGTAAGAATC TGTATATTTTAATAGGTAAATCTTTAAGTCTGTTCCCTTCTAATTCTGTATCATACATTG CTTTTGTAGAAATAAATGTGCATTTCTTTCCTTAGTTTTGGGATGTCCTCGTTGACACTT GTATAATAAATATCCTCTTGATATTATTTTCAGCCTTTATCACTAGATATTGAACGTGAT TAGAATGTTTTTTGAAGGTTTCCTCACTTTTATTTGCCTTAGACAATTATTTTAAGTTGT CAAAGTCAGATCTTTGCAGCTTTGATGGGAACATTTTGTTCTTAAAAATCATTTCTTTTT TTCTAATCTCCCATGTTATTTTATTCTAAGCATTTCCCCGTTTCTCATATTTAAACCATA TATTTGGTAGATAACTTAAAACAGTATGATTTGGTCAGAATTTTCTTTATACAATTATGG GAGCATCATTTTATCTCCATGGTTACTTGTGTGATACAACATATACATCTGTTAAAGAAA ATAATCACTTTTCTAGGGGAGGGAGGTAGAAAAGTATATTCTAAACTTGGATTTTGAGTT TGTGGTCTTGTCTTAATTTTTGTGTTGGCCCTGAAACATACCAATATGTGTTTTCAAGAA TTTTTGTTTAAGTAAGTATTGTATGAAAGTTTACAAAATGAAGGAAGCTCATCTACACTT GAATCTGTAAGCAAGATAACACGCAAGTGGTACCAAATGATTAACTTTGTTGTTTTATAA ATTTGTATGAATTTGGAGTATCTGTTGCCCATTACTATACATGTGCAAATAAATGTGGCT TAGACTTGTGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCCTATGTCTCAGGCTCAGCCCCAGCCTCAGCCCCAGCCCCAGTCCCAGCCACAGCCA CAGCCACAGGCCCAGACCCAGGCCCAGTGCCAGTCCCAGTCCCAACCAGCACTCCAGCCC CAGCCTCTCTCTCAGCCTGAGACTATGCCCTTAGCTGTTTTACAGCCACCACCTCAGGCT ATTCAGGAGCAAGGGCATTTACCACCTGAGAGAAAGGAGTTTCCTGTAGAATCTGCAAAA CTGACTGAGGTGACAGTAGAGCCAGTCTTGACAGTACATCCAGAGAGCAAGAGCAAAACC AAAACTAGGAGCAGAAGTAGAGGTCGAGCTAGAAATAAAACAAGCAAGAGCAGAAGTCGA AGCAGTAGCAGTAGTAGTTCTAGTAGCAGTTCAACCAGTAGCAGCAGTGGAAGCAGTTCT AGCAGTGGCAGTAGTAGTAGTCGAAGTAGTTCCAGTAGCAGCTCCAGTACAAGTGGCAGC AGCAGTAGAGACAGTAGCAGCAGCACTACCAGTAGTAGTGAGAGTAGAAGTCGAAGTAGG GGCCGGGGACATAACAGAGATAGAAAACACAGGAGGAGTGTGGATCGGAAGCGGAGGGAT GCTTCTGGACTAGAAAGAAGTCACAAATCTTCAAAAGGTGGTAGTAGTAGAGATACAAAA GGATCAAAGGATAAGAATTCCCGGTCTGACAGAAAGAGGTCTATATCAGAGAGTAGTCGA TCAGGCAAAAGATCCTCAAGAAGTGAAAGAGACCGAAAATCAGACAGGAAAGACAAAAGG CGTTAATGGAAGAAGCCAGGCTTTCTTAGCCTATTCTTGCAGCAGAAGATTTCTTGATGA GTAAAAGGATTACCTTTCCTTGTAAGGAGAATGCTGCCTTAAGAATTGCATGTTGTAAAA ATTTTTTTGGAAAATACAGACTGTTTGTTTACCAGACATTCTTGTACTTTTGCATAATTT TGTAAGAGTTATTTATCAAAATTATGTGAGGTTCCAAAATATGTAAAAATAATAATAATA AAAAAAGATTAACATCCCTTGTCATCTTTTTTAAATATCCTATACTCTTCAGTAAGAATC TGTATATTTTAATAGGTAAATCTTTAAGTCTGTTCCCTTCTAATTCTGTATCATACATTG CTTTTGTAGAAATAAATGTGCATTTCTTTCCTTAGTTTTGGGATGTCCTCGTTGACACTT GTATAATAAATATCCTCTTGATATTATTTTCAGCCTTTATCACTAGATATTGAACGTGAT TAGAATGTTTTTTGAAGGTTTCCTCACTTTTATTTGCCTTAGACAATTATTTTAAGTTGT CAAAGTCAGATCTTTGCAGCTTTGATGGGAACATTTTGTTCTTAAAAATCATTTCTTTTT TTCTAATCTCCCATGTTATTTTATTCTAAGCATTTCCCCGTTTCTCATATTTAAACCATA TATTTGGTAGATAACTTAAAACAGTATGATTTGGTCAGAATTTTCTTTATACAATTATGG GAGCATCATTTTATCTCCATGGTTACTTGTGTGATACAACATATACATCTGTTAAAGAAA ATAATCACTTTTCTAGGGGAGGGAGGTAGAAAAGTATATTCTAAACTTGGATTTTGAGTT TGTGGTCTTGTCTTAATTTTTGTGTTGGCCCTGAAACATACCAATATGTGTTTTCAAGAA TTTTTGTTTAAGTAAGTATTGTATGAAAGTTTACAAAATGAAGGAAGCTCATCTACACTT GAATCTGTAAGCAAGATAACACGCAAGTGGTACCAAATGATTAACTTTGTTGTTTTATAA ATTTGTATGAATTTGGAGTATCTGTTGCCCATTACTATACATGTGCAAATAAATGTGGCT TAGACTTGTGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 17-289, - strand, RNAz p=0.999872 | |
| 650-1005, + strand, RNAz p=0.982725 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 17-289, - strand, RNAz p=0.999872 | |
| 650-1005, + strand, RNAz p=0.982725 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 820-893, + strand, RNAmicro p=0.989254 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 111-289, AM009974 KN-252-bone-marrow, Bos indicus Bos indicus cDNA clone (emb|AM009974.1|), blast E-value=0, identity=89.94% | |
| 111-289, AM010482 KN-252-bone-marrow, Bos indicus Bos indicus cDNA clone (emb|AM010482.1|), blast E-value=0, identity=89.94% | |
| 111-289, AM012168 KN-252-bone-marrow, Bos indicus Bos indicus cDNA clone (emb|AM012168.1|), blast E-value=0, identity=89.94% | |
| 111-289, AM012676 KN-252-bone-marrow, Bos indicus Bos indicus cDNA clone (emb|AM012676.1|), blast E-value=0, identity=89.94% | |
| 111-289, 000313BAGA001105HT BAGA Bos taurus cDNA, mRNA sequence (gb|DY092267.1|), blast E-value=0, identity=89.94% | |
| 111-289, 000712BTSA004088HT BTSA Bos taurus cDNA, mRNA sequence (gb|DY211529.1|), blast E-value=0, identity=89.94% | |
| 650-1005, CR453819 Normalized and Subtracted bovine embryonic and (emb|CR453819.2|), blast E-value=0, identity=96.65% | |
| 650-1005, 4098844 BARC 10BOV Bos taurus cDNA clone 10BOV4_P03 5', mRNA (gb|CK958161.1|), blast E-value=0, identity=96.65% | |
| 650-1005, BE030007A10B11 BE03 Normalized and Subtracted bovine embryonic and (gb|CN434194.1|), blast E-value=0, identity=96.65% | |
| 650-1005, LB02524.CR_P10 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV874649.1|), blast E-value=0, identity=96.65% | |
| 650-1005, 1575807 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY455830.1|), blast E-value=0, identity=96.65% | |
| 650-1005, LB01731.CR.1_K01 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE334973.1|), blast E-value=0, identity=96.65% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 111-289, AM009974 KN-252-bone-marrow, Bos indicus Bos indicus cDNA clone (emb|AM009974.1|), blast E-value=0, identity=89.94% | |
| 111-289, AM010482 KN-252-bone-marrow, Bos indicus Bos indicus cDNA clone (emb|AM010482.1|), blast E-value=0, identity=89.94% | |
| 111-289, AM012168 KN-252-bone-marrow, Bos indicus Bos indicus cDNA clone (emb|AM012168.1|), blast E-value=0, identity=89.94% | |
| 111-289, AM012676 KN-252-bone-marrow, Bos indicus Bos indicus cDNA clone (emb|AM012676.1|), blast E-value=0, identity=89.94% | |
| 111-289, 000313BAGA001105HT BAGA Bos taurus cDNA, mRNA sequence (gb|DY092267.1|), blast E-value=0, identity=89.94% | |
| 111-289, 000712BTSA004088HT BTSA Bos taurus cDNA, mRNA sequence (gb|DY211529.1|), blast E-value=0, identity=89.94% | |
| 650-1005, CR453819 Normalized and Subtracted bovine embryonic and (emb|CR453819.2|), blast E-value=0, identity=96.65% | |
| 650-1005, 4098844 BARC 10BOV Bos taurus cDNA clone 10BOV4_P03 5', mRNA (gb|CK958161.1|), blast E-value=0, identity=96.65% | |
| 650-1005, BE030007A10B11 BE03 Normalized and Subtracted bovine embryonic and (gb|CN434194.1|), blast E-value=0, identity=96.65% | |
| 650-1005, LB02524.CR_P10 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV874649.1|), blast E-value=0, identity=96.65% | |
| 650-1005, 1575807 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY455830.1|), blast E-value=0, identity=96.65% | |
| 650-1005, LB01731.CR.1_K01 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE334973.1|), blast E-value=0, identity=96.65% |
| Aligned organism(s): 3 entry(ies) | More info |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
| 17-1872, gnl|bosTau2|chr21 (33595401-33593559) | |
| 17-1872, gnl|Hg17|chr14 (38720061-38721898) | |
| 17-1872, gnl|Mm7|chr12 (57006932-57008751) |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 17-1872, gnl|bosTau2|chr21 (33595401-33593559) | |
| 17-1872, gnl|Hg17|chr14 (38720061-38721898) | |
| 17-1872, gnl|Mm7|chr12 (57006932-57008751) |
| Expressed library(ies): 43 entry(ies) | More info |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
| lin (0.728014) | |
| cut (0.509771) | |
| liv (0.438853) | |
| aor (0.390549) | |
| sug (0.381874) | |
| cmu (0.372787) | |
| sin (0.349895) | |
| fco (0.314416) | |
| nca (0.273748) | |
| kid (0.259471) | |
| ret (0.257467) | |
| thg (0.253582) | |
| tra (0.246184) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| fty (0.17584) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cbl (0.114797) | |
| eje (0.0988338) |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.728014) | |
| cut (0.509771) | |
| liv (0.438853) | |
| aor (0.390549) | |
| sug (0.381874) | |
| cmu (0.372787) | |
| sin (0.349895) | |
| fco (0.314416) | |
| nca (0.273748) | |
| kid (0.259471) | |
| ret (0.257467) | |
| thg (0.253582) | |
| tra (0.246184) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| fty (0.17584) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cbl (0.114797) | |
| eje (0.0988338) |