Non-Coding RNA Search

Ss1.1-rcmu39_b15.5

Sequence:


               
               ACTGTGATGCTGTTCAACCTGGGCAGCGCCTACTGCCTGAGGAGCGAATATGACAAAGCC
CGGAAGTGTCTGCACCAGGCGGCCTCGATGATCCATCCTAAAGAGGTGCCCCCTGAAGCT
ATCTTATTGGCTGTCTACCTTGAGCTGCAGAATGGTAACACCCAGCTGGCCCTACAGATC
ATCAAAAGGAATCAGCTGCTCCCTGCAGTGAAAACACTCTCTGAAATGAGAAAGAAGCCA
GTGTTTCAGCCTGTCCACCCAATCCAGCCCATCCAAATGCCAGCGTTCACTGTACAGAGA
AAGTGATATTTTGCTCTCAGAAAACTGTTACCTGAGACCCAGGGGAGTATTTATGAGCCT
TTTTAGTTGTATGACAAAATGAATAAAAGACAGACGGTGATGGGTGCTAGTTTTGAAGAC
AAAATTTTGAAATGATTCTAACCCCTGATTTTTCTTTTTTTTGCCAGAAGCTTACTTAAA
ATTAAGGATTCGCAAATTCATTTTCATCTGTTTTCCCTTTAATCTTTGCTAGACTATTAA
TTTTGAGCCATTATGTGATATATCTGTGTCATAGGCAATTAAACCATGGTCTTATCAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGTGATGCTGTTCAACCTGGGCAGCGCCTACTGCCTGAGGAGCGAATATGACAAAGCC
CGGAAGTGTCTGCACCAGGCGGCCTCGATGATCCATCCTAAAGAGGTGCCCCCTGAAGCT
ATCTTATTGGCTGTCTACCTTGAGCTGCAGAATGGTAACACCCAGCTGGCCCTACAGATC
ATCAAAAGGAATCAGCTGCTCCCTGCAGTGAAAACACTCTCTGAAATGAGAAAGAAGCCA
GTGTTTCAGCCTGTCCACCCAATCCAGCCCATCCAAATGCCAGCGTTCACTGTACAGAGA
AAGTGATATTTTGCTCTCAGAAAACTGTTACCTGAGACCCAGGGGAGTATTTATGAGCCT
TTTTAGTTGTATGACAAAATGAATAAAAGACAGACGGTGATGGGTGCTAGTTTTGAAGAC
AAAATTTTGAAATGATTCTAACCCCTGATTTTTCTTTTTTTTGCCAGAAGCTTACTTAAA
ATTAAGGATTCGCAAATTCATTTTCATCTGTTTTCCCTTTAATCTTTGCTAGACTATTAA
TTTTGAGCCATTATGTGATATATCTGTGTCATAGGCAATTAAACCATGGTCTTATCAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28503009|gb|AAH47204.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28503009|gb|AAH47204.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               432-545, - strand, RNAz p=0.709863

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               432-545, - strand, RNAz p=0.709863

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               432-600, gnl|bosTau2|chr14 (41174953-41175123)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               432-600, gnl|bosTau2|chr14 (41174953-41175123)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               elu (0.385356)
               

               
               cmu (0.372787)
               

               
               cte (0.29274)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cmu (0.372787)
               

               
               cte (0.29274)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

	elu (0.385356)
	cmu (0.372787)
	cte (0.29274)
	cut (0.169924)
	cki (0.165235)
	lin (0.145603)
	csk (0.140746)
	ret (0.128733)
	bla (0.124347)