Non-Coding RNA Search

Ss1.1-rcmu39_c22.5

Sequence:


               
               ACCCGTCTGGCGGGAAGGAGAGACAGAGTTGAGGAACGGGTAGGAGGGTGAGGAAGGAAA
TAGGTTACTGCTTATCAGATGGCATAAATTTTCAAGGAGAATCAAAATGCAAAACTTGGG
AATAAATCATAGCAATATCATAATTAATGTAGTAGTAGTGTTGCTGTTTATTAATGCTGA
AGTGTGGTTTTCCTAACTGTCTGACTTATAATTTGCATACCATTAAATAATGCATAATAT
GGCACGCTGGATTCTGTTTTTCAAATATATGCTTTTGGTGGCTACCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCGTCTGGCGGGAAGGAGAGACAGAGTTGAGGAACGGGTAGGAGGGTGAGGAAGGAAA
TAGGTTACTGCTTATCAGATGGCATAAATTTTCAAGGAGAATCAAAATGCAAAACTTGGG
AATAAATCATAGCAATATCATAATTAATGTAGTAGTAGTGTTGCTGTTTATTAATGCTGA
AGTGTGGTTTTCCTAACTGTCTGACTTATAATTTGCATACCATTAAATAATGCATAATAT
GGCACGCTGGATTCTGTTTTTCAAATATATGCTTTTGGTGGCTACCAT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-288, gnl|bosTau2|chr11 (29345038-29344750)
               

               
               1-288, gnl|canFam2|chr10 (63736458-63736970)
               

               
               1-288, gnl|echTel1|scaffold_320552 (78305-77796)
               

               
               1-288, gnl|hg17|chr2 (60590326-60590821)
               

               
               1-288, gnl|Hg17|chr2 (60590853-60590565)
               

               
               1-288, gnl|loxAfr1|scaffold_1712 (11479-10989)
               

               
               1-288, gnl|mm7|chr11 (24125784-24125326)
               

               
               1-288, gnl|Mm7|chr11 (24125292-24125566)
               

               
               1-288, gnl|monDom2|scaffold_1 (25081624-25082127)
               

               
               1-288, gnl|oryCun1|scaffold_212573 (111733-112209)
               

               
               1-288, gnl|panTro1|chr12 (62770444-62770943)
               

               
               1-288, gnl|rheMac2|chr13 (60604080-60604576)
               

               
               1-288, gnl|rn3|chr14 (105116151-105115706)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-288, gnl|bosTau2|chr11 (29345038-29344750)
               

               
               1-288, gnl|canFam2|chr10 (63736458-63736970)
               

               
               1-288, gnl|echTel1|scaffold_320552 (78305-77796)
               

               
               1-288, gnl|hg17|chr2 (60590326-60590821)
               

               
               1-288, gnl|Hg17|chr2 (60590853-60590565)
               

               
               1-288, gnl|loxAfr1|scaffold_1712 (11479-10989)
               

               
               1-288, gnl|mm7|chr11 (24125784-24125326)
               

               
               1-288, gnl|Mm7|chr11 (24125292-24125566)
               

               
               1-288, gnl|monDom2|scaffold_1 (25081624-25082127)
               

               
               1-288, gnl|oryCun1|scaffold_212573 (111733-112209)
               

               
               1-288, gnl|panTro1|chr12 (62770444-62770943)
               

               
               1-288, gnl|rheMac2|chr13 (60604080-60604576)
               

               
               1-288, gnl|rn3|chr14 (105116151-105115706)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cmu (0.186393)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)

	1-288, gnl\|bosTau2\|chr11 (29345038-29344750)
	1-288, gnl\|canFam2\|chr10 (63736458-63736970)
	1-288, gnl\|echTel1\|scaffold_320552 (78305-77796)
	1-288, gnl\|hg17\|chr2 (60590326-60590821)
	1-288, gnl\|Hg17\|chr2 (60590853-60590565)
	1-288, gnl\|loxAfr1\|scaffold_1712 (11479-10989)
	1-288, gnl\|mm7\|chr11 (24125784-24125326)
	1-288, gnl\|Mm7\|chr11 (24125292-24125566)
	1-288, gnl\|monDom2\|scaffold_1 (25081624-25082127)
	1-288, gnl\|oryCun1\|scaffold_212573 (111733-112209)
	1-288, gnl\|panTro1\|chr12 (62770444-62770943)
	1-288, gnl\|rheMac2\|chr13 (60604080-60604576)
	1-288, gnl\|rn3\|chr14 (105116151-105115706)