Non-Coding RNA Search

Ss1.1-rcmu40_b17.5

Sequence:


               
               CCGGCGGAGGGCCTAGGAGCACGCCCCGCCCACGCTGCACCCGGAGCGTTGGCCACACTG
TGCGTGCCCGTCAGCGAGAGAGGCCGAGGCGTCCTACTGCGGCTGCGCGCTGACGTCGCT
CCAATGGGCCAATGAACGGAGAGGTGAGCGGGCGGTAGCCGAGCCCGGCTTCCGGTTCCG
GTGGGCGTCTGTGTGCGGACTCTTGTGCTACGTGTCTCTAGAGTCGGAGGCGGCGGCGAG
AAGTAGGCATCATGGATCAGGTGATGCAGTTCGTTGAGCCAAGTCGGCAGTTTGTGAAGG
ACTCCATTCGGCTGGTTAAAAGATGCACCAAACCTGATAGAAAAGAGTTCCAGAAGATTG
CCATGGCAACAGCAATAGGATTTGCTATAATGGGATTCATTGGTTTTTTTGTGAAATTGA
TCCATATTCCTATTAATAACATCATTGTTGGTGGCTGAATACCTTTTTAAAACAGTGTTT
TTCGTCTTGGGGATTGATGAACAAGTGAGGATTCAAGAAGCTCATGGAGTGAAAATTTGC
CTGTATCTTTTGTGTTTTTTTTTCTTCCAAGATTTTTTTTATTTCTAAATTAAAATAATT
TCAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCGGAGGGCCTAGGAGCACGCCCCGCCCACGCTGCACCCGGAGCGTTGGCCACACTG
TGCGTGCCCGTCAGCGAGAGAGGCCGAGGCGTCCTACTGCGGCTGCGCGCTGACGTCGCT
CCAATGGGCCAATGAACGGAGAGGTGAGCGGGCGGTAGCCGAGCCCGGCTTCCGGTTCCG
GTGGGCGTCTGTGTGCGGACTCTTGTGCTACGTGTCTCTAGAGTCGGAGGCGGCGGCGAG
AAGTAGGCATCATGGATCAGGTGATGCAGTTCGTTGAGCCAAGTCGGCAGTTTGTGAAGG
ACTCCATTCGGCTGGTTAAAAGATGCACCAAACCTGATAGAAAAGAGTTCCAGAAGATTG
CCATGGCAACAGCAATAGGATTTGCTATAATGGGATTCATTGGTTTTTTTGTGAAATTGA
TCCATATTCCTATTAATAACATCATTGTTGGTGGCTGAATACCTTTTTAAAACAGTGTTT
TTCGTCTTGGGGATTGATGAACAAGTGAGGATTCAAGAAGCTCATGGAGTGAAAATTTGC
CTGTATCTTTTGTGTTTTTTTTTCTTCCAAGATTTTTTTTATTTCTAAATTAAAATAATT
TCAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5SWJ8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5SWJ8_MOUSE

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               380-533, gnl|bosTau2|chr9 (36331812-36331963)
               

               
               380-533, gnl|Mm7|chrX (146869185-146869048)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               380-533, gnl|bosTau2|chr9 (36331812-36331963)
               

               
               380-533, gnl|Mm7|chrX (146869185-146869048)

Expressed library(ies): 55 entry(ies)

More info

Expressed library(ies): 55 entry(ies)

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               cmu (2.05033)
               

               
               csk (1.68895)
               

               
               sto (1.43859)
               

               
               rec (1.38456)
               

               
               che (1.36314)
               

               
               cki (1.32188)
               

               
               cte (1.17096)
               

               
               duo (0.864006)
               

               
               mcp (0.853242)
               

               
               cje (0.826173)
               

               
               aor (0.781097)
               

               
               nca (0.684369)
               

               
               cut (0.679694)
               

               
               spc (0.566829)
               

               
               cga (0.558191)
               

               
               sag (0.548145)
               

               
               nje (0.49776)
               

               
               eje (0.494169)
               

               
               cbe (0.478469)
               

               
               cst (0.420109)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               ebs (0.354904)
               

               
               ecc (0.345105)
               

               
               sme (0.305437)
               

               
               hyp (0.285673)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               thg (0.253582)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 55 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (2.05033)
               

               
               csk (1.68895)
               

               
               sto (1.43859)
               

               
               rec (1.38456)
               

               
               che (1.36314)
               

               
               cki (1.32188)
               

               
               cte (1.17096)
               

               
               duo (0.864006)
               

               
               mcp (0.853242)
               

               
               cje (0.826173)
               

               
               aor (0.781097)
               

               
               nca (0.684369)
               

               
               cut (0.679694)
               

               
               spc (0.566829)
               

               
               cga (0.558191)
               

               
               sag (0.548145)
               

               
               nje (0.49776)
               

               
               eje (0.494169)
               

               
               cbe (0.478469)
               

               
               cst (0.420109)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               ebs (0.354904)
               

               
               ecc (0.345105)
               

               
               sme (0.305437)
               

               
               hyp (0.285673)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               thg (0.253582)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	380-533, gnl\|bosTau2\|chr9 (36331812-36331963)
	380-533, gnl\|Mm7\|chrX (146869185-146869048)

	cmu (2.05033)
	csk (1.68895)
	sto (1.43859)
	rec (1.38456)
	che (1.36314)
	cki (1.32188)
	cte (1.17096)
	duo (0.864006)
	mcp (0.853242)
	cje (0.826173)
	aor (0.781097)
	nca (0.684369)
	cut (0.679694)
	spc (0.566829)
	cga (0.558191)
	sag (0.548145)
	nje (0.49776)
	eje (0.494169)
	cbe (0.478469)
	cst (0.420109)
	col (0.390016)
	elu (0.385356)
	ebs (0.354904)
	ecc (0.345105)
	sme (0.305437)
	hyp (0.285673)
	hlv (0.278513)
	fce (0.271592)
	nmm (0.265604)
	thg (0.253582)
	eep (0.245128)
	cly (0.241284)
	eru (0.240096)
	pan (0.23596)
	ece (0.229305)
	mas (0.210305)
	jej (0.197844)
	nep (0.183925)
	fty (0.17584)
	ill (0.175593)
	fbs (0.175346)
	eye (0.170503)
	nco (0.161734)
	fco (0.157208)
	cag (0.151194)
	bfe (0.149858)
	pty (0.142714)
	lnt (0.142308)
	pla (0.133672)
	ute (0.132784)
	cov (0.132153)
	ova (0.129132)
	ese (0.126502)
	nbm (0.0993246)
	ldo (0.0970026)