Non-Coding RNA Search

Ss1.1-rcol1004b_k8.5

Sequence:


               
               GAAGATGGAATCAGACAAAATGATGCCTGGGGGCTTAACTGAAGCCAGACCTGCCGATAC
AGAAATCCAGAAGATTGCCACCACGGTTAAACCACAGCTTGAAGAAAAAACAAATAAAAC
TTATGAAAAATTTGAAGCTGTTGAGTACAAATCTCAAGTGGTTGCTGGAATAAATTACTA
CATCAAGGTTCATGTAGGTGGTAATAGCTACGTTCACATAAAAGTATTTAAAAGTCTTCC
TTACCAAAATAAGCCTTTGGAGCTTAGTGGCTACCAGGTTGACAAAACCAAGGATGATGA
GCTGACCGGCTTTTAGCAGCATGATCTGGAAGCAGCTGATTCTTCCCACTGGCTCTTGAG
TAATGATCCCTGCGAATAAATGCAACTATCAATATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGATGGAATCAGACAAAATGATGCCTGGGGGCTTAACTGAAGCCAGACCTGCCGATAC
AGAAATCCAGAAGATTGCCACCACGGTTAAACCACAGCTTGAAGAAAAAACAAATAAAAC
TTATGAAAAATTTGAAGCTGTTGAGTACAAATCTCAAGTGGTTGCTGGAATAAATTACTA
CATCAAGGTTCATGTAGGTGGTAATAGCTACGTTCACATAAAAGTATTTAAAAGTCTTCC
TTACCAAAATAAGCCTTTGGAGCTTAGTGGCTACCAGGTTGACAAAACCAAGGATGATGA
GCTGACCGGCTTTTAGCAGCATGATCTGGAAGCAGCTGATTCTTCCCACTGGCTCTTGAG
TAATGATCCCTGCGAATAAATGCAACTATCAATATAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47523140|ref|NP_999024.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523140|ref|NP_999024.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               175-399, gnl|bosTau2|chr1 (34700527-34700300)
               

               
               175-399, gnl|Hg17|chr3 (123542953-123543188)
               

               
               175-399, gnl|Mm7|chr16 (35800312-35800111)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               175-399, gnl|bosTau2|chr1 (34700527-34700300)
               

               
               175-399, gnl|Hg17|chr3 (123542953-123543188)
               

               
               175-399, gnl|Mm7|chr16 (35800312-35800111)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               csk (1.97044)
               

               
               col (0.390016)
               

               
               cbe (0.239234)
               

               
               nep (0.183925)
               

               
               ton (0.1755)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (1.97044)
               

               
               col (0.390016)
               

               
               cbe (0.239234)
               

               
               nep (0.183925)
               

               
               ton (0.1755)

	175-399, gnl\|bosTau2\|chr1 (34700527-34700300)
	175-399, gnl\|Hg17\|chr3 (123542953-123543188)
	175-399, gnl\|Mm7\|chr16 (35800312-35800111)

	csk (1.97044)
	col (0.390016)
	cbe (0.239234)
	nep (0.183925)
	ton (0.1755)