Ss1.1-rcol1005b_e9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAATCAGGAGAGAGACAGGATGTCCTGTCACTCCCAGCTGCTGACAGGCTTGCAGGGAGG GGTTTGGCTCTCCTCCTGACCTCGACAGTCATGTCCCTTTCAGACGTACACACGGCAGGA TTTTGCAGTGGTTAACGGAAGCCGACGCCCCCTTCCGTGGACGCCCGGGCAGAAGCGCGG CGTTGGGAGATGCGCTGAGCGCCCGGTCCTCCCGGGGACCCGGCCCTTGCCCCAGCCGCC TCGCTGACAGTTTGTGCTGCCCTGCCGGAGGCGACTCCTGCCCTCCCCCGCTGAGAAGTG CCTGTCCGCAGCCGCGGTCGTTTATATACCTTCCCGCGCGGGCGCCGGCGCCGCCAACGG AAGGCGGGTGGGGCAGCGCGTGATTTGGCTCCCGCGCCATGAAGGTGAAGATCAAGTGCT GGAACGGCGTGGCCACGTGGCTCTGGGTGGCCAACGACGAGAACTGCGGTATCTGCCGGA TGGCCTTCAATGGCTGCTGCCCGGACTGCAAGGTGCCCGGCGATGACTGCCCGCTGGTGT GGGGCCAGTGCTCGCACTGCTTCCACATGCACTGCATCCTCAAGTGGCTCCACGCGCAGC AGGTGCAGCAGCACTGCCCCATGTGCCGCCAGGAGTGGAAGTTCAAGGAGTGAGGCCACT GCCAGACGCCGCCCCCACCCTGGGAACCGTCCCTCTCGGCCTGTGACGGGGTTGAAACGA GGACTGGAGCTGCATTTGTTTTTTTCCATCACAACGTTGACACTTTTATCCAATAAGTAA AACTCATTAAACCACCTGAGCCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAATCAGGAGAGAGACAGGATGTCCTGTCACTCCCAGCTGCTGACAGGCTTGCAGGGAGG GGTTTGGCTCTCCTCCTGACCTCGACAGTCATGTCCCTTTCAGACGTACACACGGCAGGA TTTTGCAGTGGTTAACGGAAGCCGACGCCCCCTTCCGTGGACGCCCGGGCAGAAGCGCGG CGTTGGGAGATGCGCTGAGCGCCCGGTCCTCCCGGGGACCCGGCCCTTGCCCCAGCCGCC TCGCTGACAGTTTGTGCTGCCCTGCCGGAGGCGACTCCTGCCCTCCCCCGCTGAGAAGTG CCTGTCCGCAGCCGCGGTCGTTTATATACCTTCCCGCGCGGGCGCCGGCGCCGCCAACGG AAGGCGGGTGGGGCAGCGCGTGATTTGGCTCCCGCGCCATGAAGGTGAAGATCAAGTGCT GGAACGGCGTGGCCACGTGGCTCTGGGTGGCCAACGACGAGAACTGCGGTATCTGCCGGA TGGCCTTCAATGGCTGCTGCCCGGACTGCAAGGTGCCCGGCGATGACTGCCCGCTGGTGT GGGGCCAGTGCTCGCACTGCTTCCACATGCACTGCATCCTCAAGTGGCTCCACGCGCAGC AGGTGCAGCAGCACTGCCCCATGTGCCGCCAGGAGTGGAAGTTCAAGGAGTGAGGCCACT GCCAGACGCCGCCCCCACCCTGGGAACCGTCCCTCTCGGCCTGTGACGGGGTTGAAACGA GGACTGGAGCTGCATTTGTTTTTTTCCATCACAACGTTGACACTTTTATCCAATAAGTAA AACTCATTAAACCACCTGAGCCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 166-624, - strand, RNAz p=0.999491 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 166-624, - strand, RNAz p=0.999491 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 49-282, gnl|bosTau2|chr19 (45413476-45413714) | |
| 387-661, gnl|bosTau2|chr5 (35212162-35212434) | |
| 508-658, gnl|bosTau2|chr19 (45418258-45418408) | |
| 508-658, gnl|canFam2|chr9 (3394336-3394168) | |
| 508-658, gnl|canFam2|chr9 (3394337-3394168) | |
| 508-658, gnl|danRer3|chrUn (34388872-34388717) | |
| 508-658, gnl|danRer3|chrUn (34388872-34388717) | |
| 508-658, gnl|fr1|chrUn (128684859-128685018) | |
| 508-658, gnl|fr1|chrUn (128684870-128685018) | |
| 508-658, gnl|hg17|chr17 (77451067-77451244) | |
| 508-658, gnl|Hg17|chr17 (77451088-77451237) | |
| 508-658, gnl|hg17|chr17_random (1957074-1957255) | |
| 508-658, gnl|loxAfr1|scaffold_202647 (636-450) | |
| 508-658, gnl|loxAfr1|scaffold_202647 (636-450) | |
| 508-658, gnl|mm7|chr11 (120714311-120714484) | |
| 508-658, gnl|mm7|chr11 (120714310-120714484) | |
| 508-658, gnl|Mm7|chr11 (120714326-120714476) | |
| 508-658, gnl|monDom2|scaffold_18 (14854772-14854921) | |
| 508-658, gnl|monDom2|scaffold_18 (14854774-14854921) | |
| 508-658, gnl|oryCun1|scaffold_168122 (8573-8419) | |
| 508-658, gnl|oryCun1|scaffold_168122 (8573-8419) | |
| 508-658, gnl|panTro1|chr19 (81213368-81213545) | |
| 508-658, gnl|panTro1|chr19 (81213367-81213545) | |
| 508-658, gnl|rheMac2|chr16 (77329392-77329569) | |
| 508-658, gnl|rheMac2|chr16 (77329391-77329569) | |
| 508-658, gnl|rn3|chr10 (110011099-110011270) | |
| 508-658, gnl|rn3|chr10 (110011098-110011270) | |
| 508-658, gnl|tetNig1|chr18 (1047692-1047846) | |
| 508-658, gnl|tetNig1|chr18 (1047697-1047846) | |
| 508-658, gnl|xenTro1|scaffold_973 (139575-139408) | |
| 508-658, gnl|xenTro1|scaffold_973 (139577-139408) | |
| 668-804, gnl|bosTau2|chr19 (45418474-45418610) | |
| 668-804, gnl|canFam2|chr9 (3394155-3393898) | |
| 668-804, gnl|canFam2|chr9 (3394155-3393897) | |
| 668-804, gnl|hg17|chr17 (77451272-77451534) | |
| 668-804, gnl|Hg17|chr17 (77451296-77451422) | |
| 668-804, gnl|hg17|chr17_random (1957283-1957554) | |
| 668-804, gnl|loxAfr1|scaffold_202647 (422-161) | |
| 668-804, gnl|loxAfr1|scaffold_202647 (422-157) | |
| 668-804, gnl|mm7|chr11 (120714561-120714839) | |
| 668-804, gnl|mm7|chr11 (120714561-120714844) | |
| 668-804, gnl|Mm7|chr11 (120714593-120714726) | |
| 668-804, gnl|monDom2|scaffold_18 (14855145-14855424) | |
| 668-804, gnl|monDom2|scaffold_18 (14855145-14855433) | |
| 668-804, gnl|panTro1|chr19 (81213573-81213835) | |
| 668-804, gnl|panTro1|chr19 (81213573-81213840) | |
| 668-804, gnl|rheMac2|chr16 (77329598-77329875) | |
| 668-804, gnl|rheMac2|chr16 (77329598-77329880) | |
| 668-804, gnl|rn3|chr10 (110011344-110011634) | |
| 668-804, gnl|rn3|chr10 (110011344-110011639) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 49-282, gnl|bosTau2|chr19 (45413476-45413714) | |
| 387-661, gnl|bosTau2|chr5 (35212162-35212434) | |
| 508-658, gnl|bosTau2|chr19 (45418258-45418408) | |
| 508-658, gnl|canFam2|chr9 (3394336-3394168) | |
| 508-658, gnl|canFam2|chr9 (3394337-3394168) | |
| 508-658, gnl|danRer3|chrUn (34388872-34388717) | |
| 508-658, gnl|danRer3|chrUn (34388872-34388717) | |
| 508-658, gnl|fr1|chrUn (128684859-128685018) | |
| 508-658, gnl|fr1|chrUn (128684870-128685018) | |
| 508-658, gnl|hg17|chr17 (77451067-77451244) | |
| 508-658, gnl|Hg17|chr17 (77451088-77451237) | |
| 508-658, gnl|hg17|chr17_random (1957074-1957255) | |
| 508-658, gnl|loxAfr1|scaffold_202647 (636-450) | |
| 508-658, gnl|loxAfr1|scaffold_202647 (636-450) | |
| 508-658, gnl|mm7|chr11 (120714311-120714484) | |
| 508-658, gnl|mm7|chr11 (120714310-120714484) | |
| 508-658, gnl|Mm7|chr11 (120714326-120714476) | |
| 508-658, gnl|monDom2|scaffold_18 (14854772-14854921) | |
| 508-658, gnl|monDom2|scaffold_18 (14854774-14854921) | |
| 508-658, gnl|oryCun1|scaffold_168122 (8573-8419) | |
| 508-658, gnl|oryCun1|scaffold_168122 (8573-8419) | |
| 508-658, gnl|panTro1|chr19 (81213368-81213545) | |
| 508-658, gnl|panTro1|chr19 (81213367-81213545) | |
| 508-658, gnl|rheMac2|chr16 (77329392-77329569) | |
| 508-658, gnl|rheMac2|chr16 (77329391-77329569) | |
| 508-658, gnl|rn3|chr10 (110011099-110011270) | |
| 508-658, gnl|rn3|chr10 (110011098-110011270) | |
| 508-658, gnl|tetNig1|chr18 (1047692-1047846) | |
| 508-658, gnl|tetNig1|chr18 (1047697-1047846) | |
| 508-658, gnl|xenTro1|scaffold_973 (139575-139408) | |
| 508-658, gnl|xenTro1|scaffold_973 (139577-139408) | |
| 668-804, gnl|bosTau2|chr19 (45418474-45418610) | |
| 668-804, gnl|canFam2|chr9 (3394155-3393898) | |
| 668-804, gnl|canFam2|chr9 (3394155-3393897) | |
| 668-804, gnl|hg17|chr17 (77451272-77451534) | |
| 668-804, gnl|Hg17|chr17 (77451296-77451422) | |
| 668-804, gnl|hg17|chr17_random (1957283-1957554) | |
| 668-804, gnl|loxAfr1|scaffold_202647 (422-161) | |
| 668-804, gnl|loxAfr1|scaffold_202647 (422-157) | |
| 668-804, gnl|mm7|chr11 (120714561-120714839) | |
| 668-804, gnl|mm7|chr11 (120714561-120714844) | |
| 668-804, gnl|Mm7|chr11 (120714593-120714726) | |
| 668-804, gnl|monDom2|scaffold_18 (14855145-14855424) | |
| 668-804, gnl|monDom2|scaffold_18 (14855145-14855433) | |
| 668-804, gnl|panTro1|chr19 (81213573-81213835) | |
| 668-804, gnl|panTro1|chr19 (81213573-81213840) | |
| 668-804, gnl|rheMac2|chr16 (77329598-77329875) | |
| 668-804, gnl|rheMac2|chr16 (77329598-77329880) | |
| 668-804, gnl|rn3|chr10 (110011344-110011634) | |
| 668-804, gnl|rn3|chr10 (110011344-110011639) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| nca (0.410621) | |
| col (0.390016) | |
| elu (0.385356) | |
| hlv (0.278513) | |
| che (0.272628) | |
| pla (0.267344) | |
| ese (0.253004) | |
| nms (0.213858) | |
| mas (0.210305) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| eli (0.151814) | |
| pty (0.142714) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.410621) | |
| col (0.390016) | |
| elu (0.385356) | |
| hlv (0.278513) | |
| che (0.272628) | |
| pla (0.267344) | |
| ese (0.253004) | |
| nms (0.213858) | |
| mas (0.210305) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| eli (0.151814) | |
| pty (0.142714) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) | |
| ldo (0.0970026) |