Ss1.1-rcol1014b_l4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGATGGAACTCCAACCTCGAAAACATTTGAGCATGTGACGAGTGAAATCGGAGCAGAG GAAGCTGAGGAAGTTGGAGTGGAACACTTGTTACGGTGAGATGGGGCGGCATCGGAATCA GAAGCAGCCCGAGAGGCTGCTCGGTGTGAGGACGAGATCCACGTCCGGGGTACGGAGACC TGGCTTCTAGTCCAGGATCGTCTCTAAAGGGTCCTGAGTTCAGGATTTATGACTCTGTGG ATAGCACACTTTGTCTGGAAACTGTCGAGCCGGCTGTGACAGGAGAAGATGTGAGAAATA AAAGCAGGTGTGTGTTTTTCCAGTGAATGTAGCTCATCAGTGTTCTGCCAAGATCTGCAT CTTGGGCTGGCTTTTCTTTTAAAATACTCTGCTTACATAACCGGACTTGTTTGAAAGGGT CACAGTTTCTCAAACAATAAGATTCTTTCTAGTTCAATTACTGCTGACTGATGTAAAAGC TCTCAAAAAGTCAGCTGCAGATGGAGAGAATGCCACCCTTTTCAGAAACAGCAAAGTTGG AGTAGAGTGTGTGTGTGTGTGATTCCATTTTAGCTCCCACTTATCTCTCGAAAAATGCCT TGTAATGAGAAAGAAAATTTATGCCTCCAAATGGAAACAAAACTAAGGCAATTTATATTC AAATCTTTCTCAAATTGAGAAGTAACATTTTTCTTTTTAAAAACTTGCTCTTCCTCCCAA ACTGGGTGTTTTTTTAGAATGGGAACATCTGTGTGATAGAATTGTACACTGACGTGTTTC CCTGTCCTTTTTCATGGGTCGTTACAGAGACATCAAAGACATTACAGTGGGCACGCTTTC CCAGCGGATCACAAACCAAGTCCACGGTTTGAAGGGACTCAACTCCAAGCTTATGGATAT CAGGAGATACCTGGAGAAAGTGGTCACCGGCAAGATGCCCATCAACCACCAGATCATCTA CCAGTTGCAGGACGTCTTCAACCTGATGCCAGATGTCAGCCTGCAGGAGTTTGTCAAGGC TTTTTACCTGAAGACCAACGACCAGATGGCGGTGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGATGGAACTCCAACCTCGAAAACATTTGAGCATGTGACGAGTGAAATCGGAGCAGAG GAAGCTGAGGAAGTTGGAGTGGAACACTTGTTACGGTGAGATGGGGCGGCATCGGAATCA GAAGCAGCCCGAGAGGCTGCTCGGTGTGAGGACGAGATCCACGTCCGGGGTACGGAGACC TGGCTTCTAGTCCAGGATCGTCTCTAAAGGGTCCTGAGTTCAGGATTTATGACTCTGTGG ATAGCACACTTTGTCTGGAAACTGTCGAGCCGGCTGTGACAGGAGAAGATGTGAGAAATA AAAGCAGGTGTGTGTTTTTCCAGTGAATGTAGCTCATCAGTGTTCTGCCAAGATCTGCAT CTTGGGCTGGCTTTTCTTTTAAAATACTCTGCTTACATAACCGGACTTGTTTGAAAGGGT CACAGTTTCTCAAACAATAAGATTCTTTCTAGTTCAATTACTGCTGACTGATGTAAAAGC TCTCAAAAAGTCAGCTGCAGATGGAGAGAATGCCACCCTTTTCAGAAACAGCAAAGTTGG AGTAGAGTGTGTGTGTGTGTGATTCCATTTTAGCTCCCACTTATCTCTCGAAAAATGCCT TGTAATGAGAAAGAAAATTTATGCCTCCAAATGGAAACAAAACTAAGGCAATTTATATTC AAATCTTTCTCAAATTGAGAAGTAACATTTTTCTTTTTAAAAACTTGCTCTTCCTCCCAA ACTGGGTGTTTTTTTAGAATGGGAACATCTGTGTGATAGAATTGTACACTGACGTGTTTC CCTGTCCTTTTTCATGGGTCGTTACAGAGACATCAAAGACATTACAGTGGGCACGCTTTC CCAGCGGATCACAAACCAAGTCCACGGTTTGAAGGGACTCAACTCCAAGCTTATGGATAT CAGGAGATACCTGGAGAAAGTGGTCACCGGCAAGATGCCCATCAACCACCAGATCATCTA CCAGTTGCAGGACGTCTTCAACCTGATGCCAGATGTCAGCCTGCAGGAGTTTGTCAAGGC TTTTTACCTGAAGACCAACGACCAGATGGCGGTGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-116, + strand, RNAz p=0.722679 | |
| 584-700, - strand, RNAz p=0.571405 | |
| 937-1056, - strand, RNAz p=0.695356 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-116, + strand, RNAz p=0.722679 | |
| 584-700, - strand, RNAz p=0.571405 | |
| 937-1056, - strand, RNAz p=0.695356 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 1-116, gnl|bosTau2|chr18 (30558204-30558086) | |
| 1-116, gnl|canFam2|chr5 (82798828-82798918) | |
| 1-116, gnl|canFam2|chr5 (82798831-82798918) | |
| 1-116, gnl|canFam2|chr5 (82798802-82798944) | |
| 1-116, gnl|dasNov1|scaffold_5094 (19088-18998) | |
| 1-116, gnl|dasNov1|scaffold_5094 (19085-18998) | |
| 1-116, gnl|dasNov1|scaffold_5094 (19114-18971) | |
| 1-116, gnl|echTel1|scaffold_294036 (31774-31712) | |
| 1-116, gnl|echTel1|scaffold_294036 (31772-31712) | |
| 1-116, gnl|echTel1|scaffold_294036 (31777-31707) | |
| 1-116, gnl|fr1|chrUn (73710308-73710211) | |
| 1-116, gnl|fr1|chrUn (73710306-73710211) | |
| 1-116, gnl|fr1|chrUn (73710328-73710192) | |
| 1-116, gnl|galGal2|chr11_random (258416-258336) | |
| 1-116, gnl|galGal2|chr11_random (258413-258336) | |
| 1-116, gnl|galGal2|chr11_random (258418-258308) | |
| 1-116, gnl|hg17|chr1 (51550390-51550480) | |
| 1-116, gnl|hg17|chr1 (152628672-152628759) | |
| 1-116, gnl|hg17|chr16 (72895677-72895820) | |
| 1-116, gnl|Hg17|chr16 (72895699-72895879) | |
| 1-116, gnl|loxAfr1|scaffold_1882 (101508-101423) | |
| 1-116, gnl|loxAfr1|scaffold_1882 (101506-101423) | |
| 1-116, gnl|loxAfr1|scaffold_1882 (101535-101392) | |
| 1-116, gnl|mm7|chr8 (106182616-106182532) | |
| 1-116, gnl|mm7|chr8 (106182614-106182532) | |
| 1-116, gnl|mm7|chr8 (106182640-106182518) | |
| 1-116, gnl|Mm7|chr8 (106182619-106182517) | |
| 1-116, gnl|monDom2|scaffold_23 (4212022-4212110) | |
| 1-116, gnl|monDom2|scaffold_23 (4212025-4212110) | |
| 1-116, gnl|monDom2|scaffold_23 (4211994-4212123) | |
| 1-116, gnl|oryCun1|scaffold_175916 (7428-7340) | |
| 1-116, gnl|oryCun1|scaffold_175916 (7426-7340) | |
| 1-116, gnl|oryCun1|scaffold_175916 (7455-7316) | |
| 1-116, gnl|panTro1|chr1 (49761708-49761798) | |
| 1-116, gnl|panTro1|chr1 (134559657-134559744) | |
| 1-116, gnl|panTro1|chr18 (67281433-67281576) | |
| 1-116, gnl|rheMac2|chr1 (54198672-54198762) | |
| 1-116, gnl|rheMac2|chr1 (134410798-134410888) | |
| 1-116, gnl|rheMac2|chr20 (68352025-68351882) | |
| 1-116, gnl|rn3|chr19 (37458538-37458450) | |
| 1-116, gnl|rn3|chr19 (37458536-37458450) | |
| 1-116, gnl|rn3|chr19 (37458565-37458443) | |
| 1-116, gnl|tetNig1|chr13 (4322360-4322262) | |
| 1-116, gnl|tetNig1|chr13 (4322358-4322262) | |
| 1-116, gnl|tetNig1|chr13 (4322369-4322243) | |
| 1-116, gnl|xenTro1|scaffold_578 (508766-508680) | |
| 1-116, gnl|xenTro1|scaffold_578 (508799-508674) | |
| 176-325, gnl|bosTau2|chr18 (30558088-30557944) | |
| 176-325, gnl|Hg17|chr16 (72895815-72896117) | |
| 392-1056, gnl|bosTau2|chr18 (30557706-30557015) | |
| 392-1056, gnl|Hg17|chr16 (72896194-72896936) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-116, gnl|bosTau2|chr18 (30558204-30558086) | |
| 1-116, gnl|canFam2|chr5 (82798828-82798918) | |
| 1-116, gnl|canFam2|chr5 (82798831-82798918) | |
| 1-116, gnl|canFam2|chr5 (82798802-82798944) | |
| 1-116, gnl|dasNov1|scaffold_5094 (19088-18998) | |
| 1-116, gnl|dasNov1|scaffold_5094 (19085-18998) | |
| 1-116, gnl|dasNov1|scaffold_5094 (19114-18971) | |
| 1-116, gnl|echTel1|scaffold_294036 (31774-31712) | |
| 1-116, gnl|echTel1|scaffold_294036 (31772-31712) | |
| 1-116, gnl|echTel1|scaffold_294036 (31777-31707) | |
| 1-116, gnl|fr1|chrUn (73710308-73710211) | |
| 1-116, gnl|fr1|chrUn (73710306-73710211) | |
| 1-116, gnl|fr1|chrUn (73710328-73710192) | |
| 1-116, gnl|galGal2|chr11_random (258416-258336) | |
| 1-116, gnl|galGal2|chr11_random (258413-258336) | |
| 1-116, gnl|galGal2|chr11_random (258418-258308) | |
| 1-116, gnl|hg17|chr1 (51550390-51550480) | |
| 1-116, gnl|hg17|chr1 (152628672-152628759) | |
| 1-116, gnl|hg17|chr16 (72895677-72895820) | |
| 1-116, gnl|Hg17|chr16 (72895699-72895879) | |
| 1-116, gnl|loxAfr1|scaffold_1882 (101508-101423) | |
| 1-116, gnl|loxAfr1|scaffold_1882 (101506-101423) | |
| 1-116, gnl|loxAfr1|scaffold_1882 (101535-101392) | |
| 1-116, gnl|mm7|chr8 (106182616-106182532) | |
| 1-116, gnl|mm7|chr8 (106182614-106182532) | |
| 1-116, gnl|mm7|chr8 (106182640-106182518) | |
| 1-116, gnl|Mm7|chr8 (106182619-106182517) | |
| 1-116, gnl|monDom2|scaffold_23 (4212022-4212110) | |
| 1-116, gnl|monDom2|scaffold_23 (4212025-4212110) | |
| 1-116, gnl|monDom2|scaffold_23 (4211994-4212123) | |
| 1-116, gnl|oryCun1|scaffold_175916 (7428-7340) | |
| 1-116, gnl|oryCun1|scaffold_175916 (7426-7340) | |
| 1-116, gnl|oryCun1|scaffold_175916 (7455-7316) | |
| 1-116, gnl|panTro1|chr1 (49761708-49761798) | |
| 1-116, gnl|panTro1|chr1 (134559657-134559744) | |
| 1-116, gnl|panTro1|chr18 (67281433-67281576) | |
| 1-116, gnl|rheMac2|chr1 (54198672-54198762) | |
| 1-116, gnl|rheMac2|chr1 (134410798-134410888) | |
| 1-116, gnl|rheMac2|chr20 (68352025-68351882) | |
| 1-116, gnl|rn3|chr19 (37458538-37458450) | |
| 1-116, gnl|rn3|chr19 (37458536-37458450) | |
| 1-116, gnl|rn3|chr19 (37458565-37458443) | |
| 1-116, gnl|tetNig1|chr13 (4322360-4322262) | |
| 1-116, gnl|tetNig1|chr13 (4322358-4322262) | |
| 1-116, gnl|tetNig1|chr13 (4322369-4322243) | |
| 1-116, gnl|xenTro1|scaffold_578 (508766-508680) | |
| 1-116, gnl|xenTro1|scaffold_578 (508799-508674) | |
| 176-325, gnl|bosTau2|chr18 (30558088-30557944) | |
| 176-325, gnl|Hg17|chr16 (72895815-72896117) | |
| 392-1056, gnl|bosTau2|chr18 (30557706-30557015) | |
| 392-1056, gnl|Hg17|chr16 (72896194-72896936) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| cty (0.10408) |