Non-Coding RNA Search

Ss1.1-rcol1020b_g22.5.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTACCAGTGTTTGCACAGATTGTATTTAGTTTACCTTTATCCTC
ACCACCCCTCCACACACACACACACACACACACACACACCCCAAACCATGAAATAGTTCC
ACAAATGAATCATTTTGTTCTTCATAAAATACTTAAAAAAATAACAATGGTTGTCGTCTT
ATATGATACCATGCTTTTCTTCATCAGGGTGATCAAAGTCCTAAAAACCAAAGTAACAGT
TTGCATAGGTATGTTTCATCTTGTGCAAATCTTACTAAAATAAGGCTGTTTTCAGTGTTT
AGGTAGCGATATACTGAGTAAAGAAAGCTCTGCATTCCAAATTCTCTCCAGTGACATCCC
ACTTGCCAGGCAGAGTGCTGAGACCAGTGGATCTGCCCGCACCATAAGGCAACACGTGTC
TGGCAGAATAGCCGTCTTGGAAGTAAAATGCAAAGGGACAGATGATATGTGTTTACGTGG
CGAAGGCAAGAGGGGCGCCACCCATGTTCTTCCCTTTTATAAAACGGAATCCCAGATGCA
GGTTGCAGGGGCAGATGTGCAATCTCCACGTGCTGAAGGGCCCGCCTTCTGACCCAGGCA
CCTCCAGAAATCACTGACCCCCCAGTATTCGCTTGCTGTGATCCCAGCTACCAGCCGAGG
GATGACTCAAAGGGACGGAAGAATAAGGACCAAAAACTCAGGAAAAAGGAAGCCAAGAAA
GCCTGGCCAGGGGAGCAACCAGCTGCTGAGACCTACGTTCTCAGGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTACCAGTGTTTGCACAGATTGTATTTAGTTTACCTTTATCCTC
ACCACCCCTCCACACACACACACACACACACACACACACCCCAAACCATGAAATAGTTCC
ACAAATGAATCATTTTGTTCTTCATAAAATACTTAAAAAAATAACAATGGTTGTCGTCTT
ATATGATACCATGCTTTTCTTCATCAGGGTGATCAAAGTCCTAAAAACCAAAGTAACAGT
TTGCATAGGTATGTTTCATCTTGTGCAAATCTTACTAAAATAAGGCTGTTTTCAGTGTTT
AGGTAGCGATATACTGAGTAAAGAAAGCTCTGCATTCCAAATTCTCTCCAGTGACATCCC
ACTTGCCAGGCAGAGTGCTGAGACCAGTGGATCTGCCCGCACCATAAGGCAACACGTGTC
TGGCAGAATAGCCGTCTTGGAAGTAAAATGCAAAGGGACAGATGATATGTGTTTACGTGG
CGAAGGCAAGAGGGGCGCCACCCATGTTCTTCCCTTTTATAAAACGGAATCCCAGATGCA
GGTTGCAGGGGCAGATGTGCAATCTCCACGTGCTGAAGGGCCCGCCTTCTGACCCAGGCA
CCTCCAGAAATCACTGACCCCCCAGTATTCGCTTGCTGTGATCCCAGCTACCAGCCGAGG
GATGACTCAAAGGGACGGAAGAATAAGGACCAAAAACTCAGGAAAAAGGAAGCCAAGAAA
GCCTGGCCAGGGGAGCAACCAGCTGCTGAGACCTACGTTCTCAGGACA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               6-331, gnl|bosTau2|chr12 (39625303-39625613)
               

               
               6-331, gnl|Hg17|chr4 (152942490-152942178)
               

               
               6-331, gnl|Mm7|chr3 (85772893-85773193)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-331, gnl|bosTau2|chr12 (39625303-39625613)
               

               
               6-331, gnl|Hg17|chr4 (152942490-152942178)
               

               
               6-331, gnl|Mm7|chr3 (85772893-85773193)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               col (0.195008)
               

               
               isp (0.150376)
               

               
               che (0.136314)
               

               
               ret (0.128733)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               isp (0.150376)
               

               
               che (0.136314)
               

               
               ret (0.128733)

	6-331, gnl\|bosTau2\|chr12 (39625303-39625613)
	6-331, gnl\|Hg17\|chr4 (152942490-152942178)
	6-331, gnl\|Mm7\|chr3 (85772893-85773193)