Non-Coding RNA Search

Ss1.1-rcol1020b_h12.5

Sequence:


               
               CCAAAGGTGCTGGAGTCAACCTTATTCTAGACTGCATAGGCGGCTCCTACTGGGAGAAAA
ATGTCAACTGCCTGGCTCTTGATGGTCGCTGGGTTCTCTACGGTCTGATGGGAGGAGCTG
ACGTCAGTGGGCCTCTGTTTTCAAAGCTACTTTTCAAACGAGGAAGTCTGATCACCAGTT
TGTTAAGGTCTAGGGACAAAAAGTACAAGCAGATGCTGGTGAAGAGCTTCACAGAGCAAA
TTCTGCCCCACTTCTCCATGGAGAGCCCTCACCGTTTAGTGCCGGTTCTGGACAGAGTCT
ATGCCATGACTGAAATTCAAGCGGCCCATGTGTATATGGAGACTAACAGGAACATGGGCA
AAATCGTCCTGGAGCTGCCCCAATGAAGGATGAGGGAGGGGGCAGTAGAGGACGTGGCTC
CCTCAGGTCTTCCAAGAGCAAACTTCAAGAAAATTCACTGTACAGTCAGGCCACTGGGTG
CTATTCCAGGCTGGGCTGTAACCTCCTGTTCCTTCCCCAGCCTTCTCTAACGATCCTTGT
AAAACTGGTCTAGGAAATAAAGAGTGGAATTGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAAGGTGCTGGAGTCAACCTTATTCTAGACTGCATAGGCGGCTCCTACTGGGAGAAAA
ATGTCAACTGCCTGGCTCTTGATGGTCGCTGGGTTCTCTACGGTCTGATGGGAGGAGCTG
ACGTCAGTGGGCCTCTGTTTTCAAAGCTACTTTTCAAACGAGGAAGTCTGATCACCAGTT
TGTTAAGGTCTAGGGACAAAAAGTACAAGCAGATGCTGGTGAAGAGCTTCACAGAGCAAA
TTCTGCCCCACTTCTCCATGGAGAGCCCTCACCGTTTAGTGCCGGTTCTGGACAGAGTCT
ATGCCATGACTGAAATTCAAGCGGCCCATGTGTATATGGAGACTAACAGGAACATGGGCA
AAATCGTCCTGGAGCTGCCCCAATGAAGGATGAGGGAGGGGGCAGTAGAGGACGTGGCTC
CCTCAGGTCTTCCAAGAGCAAACTTCAAGAAAATTCACTGTACAGTCAGGCCACTGGGTG
CTATTCCAGGCTGGGCTGTAACCTCCTGTTCCTTCCCCAGCCTTCTCTAACGATCCTTGT
AAAACTGGTCTAGGAAATAAAGAGTGGAATTGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47221272|emb|CAG13208.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47221272|emb|CAG13208.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               317-474, - strand, RNAz p=0.988586

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               317-474, - strand, RNAz p=0.988586

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               201-573, gnl|bosTau2|chr11 (56320980-56321348)
               

               
               201-573, gnl|Hg17|chr2 (24212289-24211955)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               201-573, gnl|bosTau2|chr11 (56320980-56321348)
               

               
               201-573, gnl|Hg17|chr2 (24212289-24211955)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               col (0.195008)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               med (0.116252)

	201-573, gnl\|bosTau2\|chr11 (56320980-56321348)
	201-573, gnl\|Hg17\|chr2 (24212289-24211955)