Non-Coding RNA Search

Ss1.1-rcol1020b_l13.5

Sequence:


               
               ACATATTAATGTTAACACTGCAGCTATTTTTGTGAAAATGTAGCTAATGAAGCCTCTCCT
CTTTTGTAATTTTGAAGATGGCTCTAACAGAATCATAATATGAAATTAGGCTTTGTTTTG
TTTTGTTTTCCTTTTTAGTGCCATACCTGAGACACA------------GCTAGGGGTCAC
ATTGGAGCTGCAGCTGCTGGCCTGCACCATAGCCACAGCAATGTGGGATACAAGCTGTAT
CTGTGACCTATACTGCAGCTTATGGCAATGATGGATCCTTAACCCTCTGAGTGAGGCCAG
GGATCGAACCCACATCCTTATGGATATGAGTCAGGTTCTTAACCCACTGAGCCACAATGG
GAATTCTGGGAATTAGATTTTACAATAAGAGCTCTTACAACAAAACTCACAGCCTTTTCC
CATCTTCCTTTAGCAGTGTAGTATATTGAGCCATTAATAATTTTGGAGTTTTTTAATCCA
GAAGGAATATAGAAAGTTTTCCAGGCTTTTCATCTGATTTGTTCATGCAGATGTATTTCT
TTTAAAACCCCTTATTTTACCTTACAGATATTTGTTGCACAGGCGGATACTGCTGTGTTT
AGAAAGTTCTATTTCAGTGTATTAAAAACTGCAAAACCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATATTAATGTTAACACTGCAGCTATTTTTGTGAAAATGTAGCTAATGAAGCCTCTCCT
CTTTTGTAATTTTGAAGATGGCTCTAACAGAATCATAATATGAAATTAGGCTTTGTTTTG
TTTTGTTTTCCTTTTTAGTGCCATACCTGAGACACA------------GCTAGGGGTCAC
ATTGGAGCTGCAGCTGCTGGCCTGCACCATAGCCACAGCAATGTGGGATACAAGCTGTAT
CTGTGACCTATACTGCAGCTTATGGCAATGATGGATCCTTAACCCTCTGAGTGAGGCCAG
GGATCGAACCCACATCCTTATGGATATGAGTCAGGTTCTTAACCCACTGAGCCACAATGG
GAATTCTGGGAATTAGATTTTACAATAAGAGCTCTTACAACAAAACTCACAGCCTTTTCC
CATCTTCCTTTAGCAGTGTAGTATATTGAGCCATTAATAATTTTGGAGTTTTTTAATCCA
GAAGGAATATAGAAAGTTTTCCAGGCTTTTCATCTGATTTGTTCATGCAGATGTATTTCT
TTTAAAACCCCTTATTTTACCTTACAGATATTTGTTGCACAGGCGGATACTGCTGTGTTT
AGAAAGTTCTATTTCAGTGTATTAAAAACTGCAAAACCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               384-628, gnl|bosTau2|chr12 (37788194-37788441)
               

               
               384-628, gnl|Hg17|chr6 (109794728-109794464)
               

               
               384-628, gnl|Mm7|chr10 (41341386-41341653)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               384-628, gnl|bosTau2|chr12 (37788194-37788441)
               

               
               384-628, gnl|Hg17|chr6 (109794728-109794464)
               

               
               384-628, gnl|Mm7|chr10 (41341386-41341653)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               col (0.195008)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               lun (0.150489)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               lun (0.150489)

	384-628, gnl\|bosTau2\|chr12 (37788194-37788441)
	384-628, gnl\|Hg17\|chr6 (109794728-109794464)
	384-628, gnl\|Mm7\|chr10 (41341386-41341653)