Non-Coding RNA Search

Ss1.1-rcol1021b_d11.5

Sequence:


               
               GTAGCAAAGCATAGGAAGTACATAGAAAGCATAGAAAGAAAAATTATCTCTTGAAAAAAA
CTGTTCTCTATTTGGTGCAGTAATCTGAGAGTTTTAAAAGGTCAAAAAATACCACAGGAA
ATGAACATAGAATTAAAAATAGTTTAAGAAAATCAGCTACACTGGGCAACCATCTTGCTC
TTGAAGAAAATCTTGTGCCAAAAGACTAAATCATTTGCATATAAGAAATAAAACACAAGT
GTATACATGATCATTCTTGAGCCAGTATTACTGAAACAGGATAAAAGTCACTGAAATCTT
ACCTAGGTTATATGCAGTATCTCTGCTAGTGCTGCCAGTCTAAATATCTTTCTTAACAAT
GCTTTCAGAAATGCCAATTTTGAACATTGTACATTTCACATTGTATATGAGAGATATTTG
CTTTACAAATGATTCAAAGTAACATTTTAAATCTTCATGGCTTTTCATCAAATATGAAGT
CTTAATTCGAAAATGAAATCACACTACCAGCAATAGATAGTTTTGTTGAAAACTCTATAA
TAAGGAACAATCGCCAGTTCTGTAAATGACTTTAAAATTCTAAATTAAAGTATTGGTACG
TTAGTAATCACAAATTTGATTTAATACTTTTTTAATCCTGTAAAGAGGACTTTTTATAAA
CATCCTTTTTATTAATCATAACATGGCGAATGTGTAGTTGCTGTTTCTGAAAAGTGACCC
AAACTCTACATCCAGAGATGATGAAAAATTCTTATAGAATTTTGTAATACGTATACATGT
TGGGTTGAAGAAATTTTATAGTTGTTGGAGTGCCATGGAATTAATACTTGCAATCCAGAT
TGCTGTAGTTTACACTTTTTCTGTATGTTTCAAATCAGGTGTGTACCATTTGTACTGAGA
ACACCACAGAATGAATTATCCAAAGTCCATTGATTTTAATATGTGTTTTGGTTTGTAAAC
AAATTATAGTAATTTCTTGCACATTTTTGGAAATTGATCGTATAAGAATTTATGTATCTG
CTTCTAGATACAATGTGTAAATAAAAATTCCATTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGCAAAGCATAGGAAGTACATAGAAAGCATAGAAAGAAAAATTATCTCTTGAAAAAAA
CTGTTCTCTATTTGGTGCAGTAATCTGAGAGTTTTAAAAGGTCAAAAAATACCACAGGAA
ATGAACATAGAATTAAAAATAGTTTAAGAAAATCAGCTACACTGGGCAACCATCTTGCTC
TTGAAGAAAATCTTGTGCCAAAAGACTAAATCATTTGCATATAAGAAATAAAACACAAGT
GTATACATGATCATTCTTGAGCCAGTATTACTGAAACAGGATAAAAGTCACTGAAATCTT
ACCTAGGTTATATGCAGTATCTCTGCTAGTGCTGCCAGTCTAAATATCTTTCTTAACAAT
GCTTTCAGAAATGCCAATTTTGAACATTGTACATTTCACATTGTATATGAGAGATATTTG
CTTTACAAATGATTCAAAGTAACATTTTAAATCTTCATGGCTTTTCATCAAATATGAAGT
CTTAATTCGAAAATGAAATCACACTACCAGCAATAGATAGTTTTGTTGAAAACTCTATAA
TAAGGAACAATCGCCAGTTCTGTAAATGACTTTAAAATTCTAAATTAAAGTATTGGTACG
TTAGTAATCACAAATTTGATTTAATACTTTTTTAATCCTGTAAAGAGGACTTTTTATAAA
CATCCTTTTTATTAATCATAACATGGCGAATGTGTAGTTGCTGTTTCTGAAAAGTGACCC
AAACTCTACATCCAGAGATGATGAAAAATTCTTATAGAATTTTGTAATACGTATACATGT
TGGGTTGAAGAAATTTTATAGTTGTTGGAGTGCCATGGAATTAATACTTGCAATCCAGAT
TGCTGTAGTTTACACTTTTTCTGTATGTTTCAAATCAGGTGTGTACCATTTGTACTGAGA
ACACCACAGAATGAATTATCCAAAGTCCATTGATTTTAATATGTGTTTTGGTTTGTAAAC
AAATTATAGTAATTTCTTGCACATTTTTGGAAATTGATCGTATAAGAATTTATGTATCTG
CTTCTAGATACAATGTGTAAATAAAAATTCCATTCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               5-1056, gnl|bosTau2|chr24 (7007447-7008497)
               

               
               5-1056, gnl|Hg17|chr18 (66147343-66148410)
               

               
               5-1056, gnl|Mm7|chr18 (89189168-89188154)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1056, gnl|bosTau2|chr24 (7007447-7008497)
               

               
               5-1056, gnl|Hg17|chr18 (66147343-66148410)
               

               
               5-1056, gnl|Mm7|chr18 (89189168-89188154)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               bfe (0.299715)
               

               
               tra (0.246184)
               

               
               col (0.195008)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ret (0.128733)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.299715)
               

               
               tra (0.246184)
               

               
               col (0.195008)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ret (0.128733)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

	5-1056, gnl\|bosTau2\|chr24 (7007447-7008497)
	5-1056, gnl\|Hg17\|chr18 (66147343-66148410)
	5-1056, gnl\|Mm7\|chr18 (89189168-89188154)

	bfe (0.299715)
	tra (0.246184)
	col (0.195008)
	liv (0.146284)
	lin (0.145603)
	pty (0.142714)
	ret (0.128733)
	clu (0.119646)
	ldo (0.0970026)