Non-Coding RNA Search

Ss1.1-rcol1021b_d19.5

Sequence:


               
               GCGGCCGCTGCCTGACAGGACTTTCTCTTTGCTTTTGTTCTACAAGTTAGGAAAGAGGAG
GTGATCCATCAGAGCTCCCCAACCTGTTGAGGGATTGGGAGTTCTTGAAGGCCCCCCAGG
GCCTGGCTCTGACAAAGTGTCTGCAATTAATGATGCTCCTTGAGCTCTGGAGACAGGATT
TATGCATCTAATAAAGTCTATNACTCCAGGCTTAGGGTCTAGGGCTGGAGGCTGAGAGCA
GGAAGTCTCAGGGGGACCATGGGAGGGGGGTCCCGGGCGGCTCTTAATGTTGCTGTGCAT
TTCCACTGCCTGCGCTAGATTCCCCCTCGGGCTGCCGTGGGCCGGTGAGGAACAGGGGGA
CAGCAGGTATAAGAGGCTGGTGTGGCCACAGGAAAGCAGATGGCAGCATGGACTCCAGGC
GGGCAGCAGTGCTACTGTTGCTGCTGCTGTTAGTAACAGACTGGGGCCATGCAGAAGGAC
CAGGGCGCCGTGGCGAAGGAGACCAGGTCTTCTGGGTAAGTTAGCATGCCCACCCCATTG
CCACCATTTTTGTCTACCTCTGCTTGAGACTCGAATTCTAGGTTCAAATACTCTCTGGCG
GCCAGGGTCATTGGGTCCGCACGTCTCATGTGACTCTGCTCAGGCTCAGCTTGCCCTGGA
AACCACTCCCTTTCCCTCGTGACCTAAATGCCCACGGCCTCTGCCCACTCTCCTTCGTGG
ATGCCCTCCCACCACAGGAGGAAGACAGTGGAGCCCTCCCACCGCAGGATGCCCAGACCC
CAGGGTCACTCTTGCGCTCCCTGCTCCAGGCCATGCAGCGACCTGGCCGGAGTCCAGCCT
TCCTGTTTCAGCCCCAAAGGTGAGTCTGAGAGGCATGGGCAAGACATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTGCCTGACAGGACTTTCTCTTTGCTTTTGTTCTACAAGTTAGGAAAGAGGAG
GTGATCCATCAGAGCTCCCCAACCTGTTGAGGGATTGGGAGTTCTTGAAGGCCCCCCAGG
GCCTGGCTCTGACAAAGTGTCTGCAATTAATGATGCTCCTTGAGCTCTGGAGACAGGATT
TATGCATCTAATAAAGTCTATNACTCCAGGCTTAGGGTCTAGGGCTGGAGGCTGAGAGCA
GGAAGTCTCAGGGGGACCATGGGAGGGGGGTCCCGGGCGGCTCTTAATGTTGCTGTGCAT
TTCCACTGCCTGCGCTAGATTCCCCCTCGGGCTGCCGTGGGCCGGTGAGGAACAGGGGGA
CAGCAGGTATAAGAGGCTGGTGTGGCCACAGGAAAGCAGATGGCAGCATGGACTCCAGGC
GGGCAGCAGTGCTACTGTTGCTGCTGCTGTTAGTAACAGACTGGGGCCATGCAGAAGGAC
CAGGGCGCCGTGGCGAAGGAGACCAGGTCTTCTGGGTAAGTTAGCATGCCCACCCCATTG
CCACCATTTTTGTCTACCTCTGCTTGAGACTCGAATTCTAGGTTCAAATACTCTCTGGCG
GCCAGGGTCATTGGGTCCGCACGTCTCATGTGACTCTGCTCAGGCTCAGCTTGCCCTGGA
AACCACTCCCTTTCCCTCGTGACCTAAATGCCCACGGCCTCTGCCCACTCTCCTTCGTGG
ATGCCCTCCCACCACAGGAGGAAGACAGTGGAGCCCTCCCACCGCAGGATGCCCAGACCC
CAGGGTCACTCTTGCGCTCCCTGCTCCAGGCCATGCAGCGACCTGGCCGGAGTCCAGCCT
TCCTGTTTCAGCCCCAAAGGTGAGTCTGAGAGGCATGGGCAAGACATG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               121-276, - strand, RNAz p=0.893557
               

               
               356-475, + strand, RNAz p=0.921575

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-276, - strand, RNAz p=0.893557
               

               
               356-475, + strand, RNAz p=0.921575

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               166-227, + strand, RNAmicro p=0.93451

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               166-227, + strand, RNAmicro p=0.93451

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-571, gnl|bosTau2|chr5 (18947752-18948307)
               

               
               10-571, gnl|Hg17|chr12 (52187923-52187377)
               

               
               10-571, gnl|Mm7|chr15 (102511146-102510605)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-571, gnl|bosTau2|chr5 (18947752-18948307)
               

               
               10-571, gnl|Hg17|chr12 (52187923-52187377)
               

               
               10-571, gnl|Mm7|chr15 (102511146-102510605)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.341006)
               

               
               col (0.195008)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               col (0.195008)

	121-276, - strand, RNAz p=0.893557
	356-475, + strand, RNAz p=0.921575

	10-571, gnl\|bosTau2\|chr5 (18947752-18948307)
	10-571, gnl\|Hg17\|chr12 (52187923-52187377)
	10-571, gnl\|Mm7\|chr15 (102511146-102510605)