Ss1.1-rcol1021b_e5.5
|
TCTTCCTGGGTTTGGGGTACTTTCTCCGCGTACCATGTGGTCTTTGATATTCTGCCCTCC
TTTACCAGCATAGGCTGCATGAGGGGGGTGCGGGCTCCCGCAATCCTGCTCGGCGGAGGG
GTGAGTTACCAGCCCCGCCCCTTCCGGTCCTCGGAACCTGGACCACTACCCGCTCTCAAA
ATCCTAGAGGTTGGCCCCGGAGGAGAGAGTGGACACCGAGTCTTTGCCTTAATTTTCACC
CTTCTCTCCCAGCTTCAAGGACTTTTTTCTTTGGGGTACAGAAGGGGGAGGGCAGAGCCT
GAGTGTCTATGCAAGCGGTAGACATAGGCTGCATGAGGGGGGTGCGGGCTCCCGCAATCC
TGCTCGGCGGAGGGGCCACTCTGCTCCTGTCGCTTCTTTGGATGCCAGCACTGCTGCCCA
TAGTCTCCCGCCTTCTGTTGCTACCCCGAGCCCTGCTGTCCATGGCTTCAGGAAGCCCCC
CGACCCAGCCCACGCCGGCCTCGGGCTCCGCCTATGTTCCCGGCTCGGTCTCTGCAGCCT
TTGTCACCTGCCCCAACGAGAAGGTCGCCAAGGAGATCGCCAGGGCTGTGGTGGAGAAGC
GCCTGGCAGCCTGTGTCAACCTCATCCCTCAGATTACATCCATCTATGAGTGGAAAGGCA
AGATTGAGGAGGACAGTGAAGTGCTGATGATGATTAAAACCCAGAGTTCCTTGGTTCCAG
CTTTGACAGATTTCGTTCGCTCTGTACACCCTTACGAAGTGGCCGAGGTGATTGCACTGC
CAGTGGAGCAGGGGAACTCCCCATACCTGCACTGGGTGCGCCAGGTTACAGAATCAGTGC
CTGACTCTGGCACAGTCCTACCATGACGAGCCTTTGCTCTTGCCAGGTTCCCCTTCAGTG
TCCTCTGACTTTCAGGCCATGACTGGAGCCTTAATAAACCCTTAGTTCTCTCTGCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCTTCCTGGGTTTGGGGTACTTTCTCCGCGTACCATGTGGTCTTTGATATTCTGCCCTCC
TTTACCAGCATAGGCTGCATGAGGGGGGTGCGGGCTCCCGCAATCCTGCTCGGCGGAGGG
GTGAGTTACCAGCCCCGCCCCTTCCGGTCCTCGGAACCTGGACCACTACCCGCTCTCAAA
ATCCTAGAGGTTGGCCCCGGAGGAGAGAGTGGACACCGAGTCTTTGCCTTAATTTTCACC
CTTCTCTCCCAGCTTCAAGGACTTTTTTCTTTGGGGTACAGAAGGGGGAGGGCAGAGCCT
GAGTGTCTATGCAAGCGGTAGACATAGGCTGCATGAGGGGGGTGCGGGCTCCCGCAATCC
TGCTCGGCGGAGGGGCCACTCTGCTCCTGTCGCTTCTTTGGATGCCAGCACTGCTGCCCA
TAGTCTCCCGCCTTCTGTTGCTACCCCGAGCCCTGCTGTCCATGGCTTCAGGAAGCCCCC
CGACCCAGCCCACGCCGGCCTCGGGCTCCGCCTATGTTCCCGGCTCGGTCTCTGCAGCCT
TTGTCACCTGCCCCAACGAGAAGGTCGCCAAGGAGATCGCCAGGGCTGTGGTGGAGAAGC
GCCTGGCAGCCTGTGTCAACCTCATCCCTCAGATTACATCCATCTATGAGTGGAAAGGCA
AGATTGAGGAGGACAGTGAAGTGCTGATGATGATTAAAACCCAGAGTTCCTTGGTTCCAG
CTTTGACAGATTTCGTTCGCTCTGTACACCCTTACGAAGTGGCCGAGGTGATTGCACTGC
CAGTGGAGCAGGGGAACTCCCCATACCTGCACTGGGTGCGCCAGGTTACAGAATCAGTGC
CTGACTCTGGCACAGTCCTACCATGACGAGCCTTTGCTCTTGCCAGGTTCCCCTTCAGTG
TCCTCTGACTTTCAGGCCATGACTGGAGCCTTAATAAACCCTTAGTTCTCTCTGCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-584, gnl|bosTau2|chr23 (5956398-5955813) |
|
1-584, gnl|Hg17|chr6 (33493826-33493235) |
|
1-584, gnl|Mm7|chr17 (25124211-25123659) |
| |
|
741-953, gnl|bosTau2|chr23 (5955151-5954930) |
|
741-953, gnl|canFam2|chr12 (5830890-5831039) |
|
741-953, gnl|dasNov1|scaffold_151941 (1464-1314) |
|
741-953, gnl|echTel1|scaffold_268024 (1236-1079) |
|
741-953, gnl|hg17|chr6 (33492298-33492454) |
|
741-953, gnl|Hg17|chr6 (33492530-33492300) |
|
741-953, gnl|mm7|chr17 (25122745-25122875) |
|
741-953, gnl|Mm7|chr17 (25122951-25122753) |
|
741-953, gnl|monDom2|scaffold_42 (14885875-14885748) |
|
741-953, gnl|panTro1|chr5 (33940812-33940966) |
|
741-953, gnl|rheMac2|chr4 (33147336-33147484) |
|
741-953, gnl|rn3|chr20 (5175339-5175483) |
|
741-953, gnl|xenTro1|scaffold_1323 (154556-154711) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-584, gnl|bosTau2|chr23 (5956398-5955813) |
|
1-584, gnl|Hg17|chr6 (33493826-33493235) |
|
1-584, gnl|Mm7|chr17 (25124211-25123659) |
| |
|
741-953, gnl|bosTau2|chr23 (5955151-5954930) |
|
741-953, gnl|canFam2|chr12 (5830890-5831039) |
|
741-953, gnl|dasNov1|scaffold_151941 (1464-1314) |
|
741-953, gnl|echTel1|scaffold_268024 (1236-1079) |
|
741-953, gnl|hg17|chr6 (33492298-33492454) |
|
741-953, gnl|Hg17|chr6 (33492530-33492300) |
|
741-953, gnl|mm7|chr17 (25122745-25122875) |
|
741-953, gnl|Mm7|chr17 (25122951-25122753) |
|
741-953, gnl|monDom2|scaffold_42 (14885875-14885748) |
|
741-953, gnl|panTro1|chr5 (33940812-33940966) |
|
741-953, gnl|rheMac2|chr4 (33147336-33147484) |
|
741-953, gnl|rn3|chr20 (5175339-5175483) |
|
741-953, gnl|xenTro1|scaffold_1323 (154556-154711) |
|
col (0.585023) |
|
pty (0.570858) |
|
nje (0.49776) |
|
csp (0.483559) |
|
cli (0.458435) |
|
cag (0.453583) |
|
hlv (0.417769) |
|
nlu (0.383362) |
|
eep (0.367692) |
|
sto (0.359648) |
|
ill (0.351185) |
|
ton (0.351) |
|
eye (0.341006) |
|
cje (0.330469) |
|
nco (0.323468) |
|
fce (0.271592) |
|
cov (0.264306) |
|
pgl (0.236967) |
|
nbm (0.198649) |
|
fcc (0.197785) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
cki (0.165235) |
|
mga (0.160205) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
nca (0.136874) |
|
che (0.136314) |
|
ute (0.132784) |
|
ese (0.126502) |
|
bla (0.124347) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
col (0.585023) |
|
pty (0.570858) |
|
nje (0.49776) |
|
csp (0.483559) |
|
cli (0.458435) |
|
cag (0.453583) |
|
hlv (0.417769) |
|
nlu (0.383362) |
|
eep (0.367692) |
|
sto (0.359648) |
|
ill (0.351185) |
|
ton (0.351) |
|
eye (0.341006) |
|
cje (0.330469) |
|
nco (0.323468) |
|
fce (0.271592) |
|
cov (0.264306) |
|
pgl (0.236967) |
|
nbm (0.198649) |
|
fcc (0.197785) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
cki (0.165235) |
|
mga (0.160205) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
nca (0.136874) |
|
che (0.136314) |
|
ute (0.132784) |
|
ese (0.126502) |
|
bla (0.124347) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
