Non-Coding RNA Search

Ss1.1-rcol1023b_e22.5

Sequence:


               
               CCCCCGCGGCGCGGGCGCTGCTGCCGTAGCCGCCGCGGGCGTTCCGCCTGTGGCGCCGGC
CCAGCGCACTTCGGAAGAGGGCGGAGACCCCGCGTCCGCAGCCAAAAGGCCACGGAGCCG
AGCACACGTCTTCGCCCTAAGCGTGCCGTTCCCGTCCTCCTGGGAGGCAGAGATCGCCCG
CGGCTCGCTGGCCCCAGATGCTGAGCCCCACCGAGGGGCGGTTGGGAAGGAGCTCACAGT
GAGCGGCAGCGACCTGGCCGTCCACTGGAGAGCTGACGATTCCCGCCTCCTCCGAATTTC
CATCGTAAACTTTCTTGACCAGCTTTCCCTGGTGATTCGGACCATGCAGCGCTTTGGGCC
CCCTGTTAGCCGCTAAGCCAGGGCTGGGGAGAGGGGCCAAGGTCTGCCCTGTGTCCCTTC
CCAGACAGTGCAGCCCTCCTGGGGCAGCGATTCCTGCCAGAATTGCCACTTTATTATGGG
GGCTTCATCTTTTGCCCGTACTGGCCCTTGCGCACTCAGGATCCGCTTATTTGTTTGGTG
CTTAAATGTTTCGTAACCACAGAAAATAAAATCGAGCTTCGAGGCTAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCGCGGCGCGGGCGCTGCTGCCGTAGCCGCCGCGGGCGTTCCGCCTGTGGCGCCGGC
CCAGCGCACTTCGGAAGAGGGCGGAGACCCCGCGTCCGCAGCCAAAAGGCCACGGAGCCG
AGCACACGTCTTCGCCCTAAGCGTGCCGTTCCCGTCCTCCTGGGAGGCAGAGATCGCCCG
CGGCTCGCTGGCCCCAGATGCTGAGCCCCACCGAGGGGCGGTTGGGAAGGAGCTCACAGT
GAGCGGCAGCGACCTGGCCGTCCACTGGAGAGCTGACGATTCCCGCCTCCTCCGAATTTC
CATCGTAAACTTTCTTGACCAGCTTTCCCTGGTGATTCGGACCATGCAGCGCTTTGGGCC
CCCTGTTAGCCGCTAAGCCAGGGCTGGGGAGAGGGGCCAAGGTCTGCCCTGTGTCCCTTC
CCAGACAGTGCAGCCCTCCTGGGGCAGCGATTCCTGCCAGAATTGCCACTTTATTATGGG
GGCTTCATCTTTTGCCCGTACTGGCCCTTGCGCACTCAGGATCCGCTTATTTGTTTGGTG
CTTAAATGTTTCGTAACCACAGAAAATAAAATCGAGCTTCGAGGCTAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|38383094|gb|AAH62330.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|38383094|gb|AAH62330.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               420-529, + strand, RNAz p=0.788463

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               420-529, + strand, RNAz p=0.788463

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               265-578, gnl|bosTau2|chrX (14697495-14697809)
               

               
               265-578, gnl|Hg17|chrX (153270098-153269822)
               

               
               265-578, gnl|Mm7|chrX (69739144-69738836)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               265-578, gnl|bosTau2|chrX (14697495-14697809)
               

               
               265-578, gnl|Hg17|chrX (153270098-153269822)
               

               
               265-578, gnl|Mm7|chrX (69739144-69738836)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               cly (0.241284)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.241284)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	265-578, gnl\|bosTau2\|chrX (14697495-14697809)
	265-578, gnl\|Hg17\|chrX (153270098-153269822)
	265-578, gnl\|Mm7\|chrX (69739144-69738836)

	cly (0.241284)
	ece (0.229305)
	fli (0.202881)
	fcc (0.197785)
	col (0.195008)
	mcp (0.170648)
	cli (0.152812)
	eli (0.151814)
	ese (0.126502)
	med (0.116252)
	nbm (0.0993246)