Ss1.1-rcol1023b_f11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGACAGTGTGCTCCGGCCTCTCATGGACTTCCTGGATGGCAACCTCACACTATTTGCT GCTGTGTGTGAGAAGACGGTTCTGAAGCGTGTCCTGAAGGAGCTCTGGCGGGTGGTAATG AACACAATGGAAAGGATGATTGTCCTGCCACCACTTACTGATCAGACGGGCACCCAACTG ATCTTCACTGCTGCCAAGGAACTGAGCCATCTTTCAAAACTCAAGGACCACATGGTGCGA GAGGAAACACGAAATCTCACCCCAAAGCAGTGTGCCATCCTTGACCTCGCTCTGGACACC ATCAAGCAATACTTCCATGCCGGAGGCAATGGGCTGAAGAAAACCTTCCTGGAGAAGAGC CCAGATCTGCAGTCCCTGCGTTATGCCCTGTCTCTGTACACACAGACCACAGACACACTC ATCAAGACCTTTGTGCGCTCACAAACAGCCCAGGGGTCTGGTGTGGATGATCCTGTGGGA GAAGTCTCTATTCAGGTGGACTTGTTTACACATCCTGGCACAGGAGAGCACAAGGTCACA GTGAAAGTGGTGGCTGCCAATGACCTCAAGTGGCAGACAGCAGGTATGTTCCGGCCCTTC GTGGAAGTAACCATGGTTGGCCCTCACCAAAGTGATAAGAAGAGGAAGTTCACAACCAAG TCTAAAAGCAACAACTGGGCTCCCAAGTACAATGAGACATTTCACTTCCTCCTGGGAAAT GAAGAGGGACCAGAAGCCTATGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGACAGTGTGCTCCGGCCTCTCATGGACTTCCTGGATGGCAACCTCACACTATTTGCT GCTGTGTGTGAGAAGACGGTTCTGAAGCGTGTCCTGAAGGAGCTCTGGCGGGTGGTAATG AACACAATGGAAAGGATGATTGTCCTGCCACCACTTACTGATCAGACGGGCACCCAACTG ATCTTCACTGCTGCCAAGGAACTGAGCCATCTTTCAAAACTCAAGGACCACATGGTGCGA GAGGAAACACGAAATCTCACCCCAAAGCAGTGTGCCATCCTTGACCTCGCTCTGGACACC ATCAAGCAATACTTCCATGCCGGAGGCAATGGGCTGAAGAAAACCTTCCTGGAGAAGAGC CCAGATCTGCAGTCCCTGCGTTATGCCCTGTCTCTGTACACACAGACCACAGACACACTC ATCAAGACCTTTGTGCGCTCACAAACAGCCCAGGGGTCTGGTGTGGATGATCCTGTGGGA GAAGTCTCTATTCAGGTGGACTTGTTTACACATCCTGGCACAGGAGAGCACAAGGTCACA GTGAAAGTGGTGGCTGCCAATGACCTCAAGTGGCAGACAGCAGGTATGTTCCGGCCCTTC GTGGAAGTAACCATGGTTGGCCCTCACCAAAGTGATAAGAAGAGGAAGTTCACAACCAAG TCTAAAAGCAACAACTGGGCTCCCAAGTACAATGAGACATTTCACTTCCTCCTGGGAAAT GAAGAGGGACCAGAAGCCTATGAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 41-169, gnl|bosTau2|chr8 (28160214-28160342) | |
| 41-169, gnl|Hg17|chr9 (35389154-35389282) | |
| 41-169, gnl|Mm7|chr4 (43272231-43272359) | |
| 305-455, gnl|bosTau2|chr8 (28161711-28161861) | |
| 305-455, gnl|Hg17|chr9 (35390291-35390441) | |
| 305-455, gnl|Mm7|chr4 (43273274-43273424) | |
| 546-707, gnl|bosTau2|chr8 (28164450-28164611) | |
| 546-707, gnl|canFam2|chr11 (54967939-54968132) | |
| 546-707, gnl|danRer3|chr10 (10226987-10226797) | |
| 546-707, gnl|dasNov1|scaffold_19524 (17191-17385) | |
| 546-707, gnl|echTel1|scaffold_321862 (77358-77165) | |
| 546-707, gnl|fr1|chrUn (176514070-176513887) | |
| 546-707, gnl|galGal2|chrZ_random (8233698-8233866) | |
| 546-707, gnl|hg17|chr9 (35393435-35393625) | |
| 546-707, gnl|Hg17|chr9 (35393435-35393596) | |
| 546-707, gnl|loxAfr1|scaffold_720 (195238-195044) | |
| 546-707, gnl|mm7|chr4 (43276789-43276982) | |
| 546-707, gnl|Mm7|chr4 (43276789-43276950) | |
| 546-707, gnl|monDom2|scaffold_17 (46402386-46402186) | |
| 546-707, gnl|oryCun1|scaffold_177763 (18552-18359) | |
| 546-707, gnl|panTro1|chr11 (35949762-35949952) | |
| 546-707, gnl|rheMac2|chr15 (42165340-42165147) | |
| 546-707, gnl|rn3|chr5 (59768322-59768520) | |
| 546-707, gnl|tetNig1|chrUn_random (53478960-53478776) | |
| 546-707, gnl|xenTro1|scaffold_898 (267889-268059) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 41-169, gnl|bosTau2|chr8 (28160214-28160342) | |
| 41-169, gnl|Hg17|chr9 (35389154-35389282) | |
| 41-169, gnl|Mm7|chr4 (43272231-43272359) | |
| 305-455, gnl|bosTau2|chr8 (28161711-28161861) | |
| 305-455, gnl|Hg17|chr9 (35390291-35390441) | |
| 305-455, gnl|Mm7|chr4 (43273274-43273424) | |
| 546-707, gnl|bosTau2|chr8 (28164450-28164611) | |
| 546-707, gnl|canFam2|chr11 (54967939-54968132) | |
| 546-707, gnl|danRer3|chr10 (10226987-10226797) | |
| 546-707, gnl|dasNov1|scaffold_19524 (17191-17385) | |
| 546-707, gnl|echTel1|scaffold_321862 (77358-77165) | |
| 546-707, gnl|fr1|chrUn (176514070-176513887) | |
| 546-707, gnl|galGal2|chrZ_random (8233698-8233866) | |
| 546-707, gnl|hg17|chr9 (35393435-35393625) | |
| 546-707, gnl|Hg17|chr9 (35393435-35393596) | |
| 546-707, gnl|loxAfr1|scaffold_720 (195238-195044) | |
| 546-707, gnl|mm7|chr4 (43276789-43276982) | |
| 546-707, gnl|Mm7|chr4 (43276789-43276950) | |
| 546-707, gnl|monDom2|scaffold_17 (46402386-46402186) | |
| 546-707, gnl|oryCun1|scaffold_177763 (18552-18359) | |
| 546-707, gnl|panTro1|chr11 (35949762-35949952) | |
| 546-707, gnl|rheMac2|chr15 (42165340-42165147) | |
| 546-707, gnl|rn3|chr5 (59768322-59768520) | |
| 546-707, gnl|tetNig1|chrUn_random (53478960-53478776) | |
| 546-707, gnl|xenTro1|scaffold_898 (267889-268059) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| clu (0.119646) |