Non-Coding RNA Search

Ss1.1-rcol1023b_j1.5

Sequence:


               
               GCACAACCTACAGGAGGTAGAAGATTGGGAGCAAGAAGATAAAGGTGAAGATATGGGTGC
CAGGCTGGAGGATAGTCCCTCAGTTCAAGCAGACTCTGAATCCCCAAGCCCCGAAGAGGT
ACCAGATTACCTCTTGCAATACAGGGCCATCCACAGTGCAGAACAGCAACAGGCTTATGA
GCAGGACTTTGAGATAGACTATGCTGAATACCGTATCCTGCATGCTCGTGTTGGGGCTGC
AAGCCAAAGGTTCATAGAGTTGGGAGCAGAGCTGAAGAAAGTTCAGAGAGGAACTTCAGA
ACACAAGGTGCTGGAAGAAAAGATAATCCAGGAATATAAAAAGTTCAGGAAGCGGTACCC
AGGTTACAGGGAAGAAAAGAGCCGCTGTGAGTACCTGCATCAGAAATTGTCCCACATTAA
AGGTCTCATCCTGGAGTTTGAGGAAAAGAACAGGGGCAGCTAAAGCTGTCAGAGGGGTCT
TTACCTTCTGCCCAGTGTGATATGAAGGAACAAAGCAGCTATCAACTAGAGTGCAACTGT
CTGCTCTTCTTATTGCTGAGTCAGTGGTGGAAAGCAGGAGAACTACTCTAGGTTCTTAAG
GTTTGGTTTTCATTACTGCCATACTTAAAAATTTTAGGGCATAGAATGACAGTTGTGCCC
AGGAGATTAGGAAAAGTGGAAGAGGCTTGGCTTCTCCACCTTTAGTTCAACCAAGTCATT
TTCAAATCCTGAAAAATGACACCATTTTCAAGACAAGATACCTTGAGAATATTAGAATTT
ACCCGATGTTTTCTCTTAATGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACAACCTACAGGAGGTAGAAGATTGGGAGCAAGAAGATAAAGGTGAAGATATGGGTGC
CAGGCTGGAGGATAGTCCCTCAGTTCAAGCAGACTCTGAATCCCCAAGCCCCGAAGAGGT
ACCAGATTACCTCTTGCAATACAGGGCCATCCACAGTGCAGAACAGCAACAGGCTTATGA
GCAGGACTTTGAGATAGACTATGCTGAATACCGTATCCTGCATGCTCGTGTTGGGGCTGC
AAGCCAAAGGTTCATAGAGTTGGGAGCAGAGCTGAAGAAAGTTCAGAGAGGAACTTCAGA
ACACAAGGTGCTGGAAGAAAAGATAATCCAGGAATATAAAAAGTTCAGGAAGCGGTACCC
AGGTTACAGGGAAGAAAAGAGCCGCTGTGAGTACCTGCATCAGAAATTGTCCCACATTAA
AGGTCTCATCCTGGAGTTTGAGGAAAAGAACAGGGGCAGCTAAAGCTGTCAGAGGGGTCT
TTACCTTCTGCCCAGTGTGATATGAAGGAACAAAGCAGCTATCAACTAGAGTGCAACTGT
CTGCTCTTCTTATTGCTGAGTCAGTGGTGGAAAGCAGGAGAACTACTCTAGGTTCTTAAG
GTTTGGTTTTCATTACTGCCATACTTAAAAATTTTAGGGCATAGAATGACAGTTGTGCCC
AGGAGATTAGGAAAAGTGGAAGAGGCTTGGCTTCTCCACCTTTAGTTCAACCAAGTCATT
TTCAAATCCTGAAAAATGACACCATTTTCAAGACAAGATACCTTGAGAATATTAGAATTT
ACCCGATGTTTTCTCTTAATGATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               668-783, + strand, RNAz p=0.936407

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               668-783, + strand, RNAz p=0.936407

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_025165, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_025165, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               136-309, gnl|bosTau2|chr21 (34501933-34501760)
               

               
               136-309, gnl|Hg17|chr15 (41853843-41853670)
               

               
               136-309, gnl|Mm7|chr2 (121180868-121180695)
               


               
               351-642, gnl|bosTau2|chr21 (34501422-34501137)
               

               
               351-642, gnl|Hg17|chr15 (41852718-41852427)
               

               
               351-642, gnl|Mm7|chr2 (121180400-121180138)
               


               
               668-783, gnl|bosTau2|chr21 (34501081-34500966)
               

               
               668-783, gnl|Hg17|chr15 (41852387-41852255)
               

               
               668-783, gnl|Mm7|chr2 (121180101-121179988)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-309, gnl|bosTau2|chr21 (34501933-34501760)
               

               
               136-309, gnl|Hg17|chr15 (41853843-41853670)
               

               
               136-309, gnl|Mm7|chr2 (121180868-121180695)
               


               
               351-642, gnl|bosTau2|chr21 (34501422-34501137)
               

               
               351-642, gnl|Hg17|chr15 (41852718-41852427)
               

               
               351-642, gnl|Mm7|chr2 (121180400-121180138)
               


               
               668-783, gnl|bosTau2|chr21 (34501081-34500966)
               

               
               668-783, gnl|Hg17|chr15 (41852387-41852255)
               

               
               668-783, gnl|Mm7|chr2 (121180101-121179988)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spl (0.286369)
               

               
               col (0.195008)
               

               
               sag (0.182715)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               col (0.195008)
               

               
               sag (0.182715)

	136-309, gnl\|bosTau2\|chr21 (34501933-34501760)
	136-309, gnl\|Hg17\|chr15 (41853843-41853670)
	136-309, gnl\|Mm7\|chr2 (121180868-121180695)

	351-642, gnl\|bosTau2\|chr21 (34501422-34501137)
	351-642, gnl\|Hg17\|chr15 (41852718-41852427)
	351-642, gnl\|Mm7\|chr2 (121180400-121180138)

	668-783, gnl\|bosTau2\|chr21 (34501081-34500966)
	668-783, gnl\|Hg17\|chr15 (41852387-41852255)
	668-783, gnl\|Mm7\|chr2 (121180101-121179988)