Ss1.1-rcol1028b_b5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAACTTCAGTCTCTAAGTAATCATTTGTTTGAAGAACTTGCCATGGATGTGTACGATG AAGTTGACAGGCGAGAGACTGATGCAGTCTGGCTTGCCACGCAAAACCACAGCACCCTGG TGACCGAGACAACCGTTGTCCCCTTCCTTCCTGTCAATCCTGAGTACTCATCAACACGGA ACCAGGGCAGACAGAAATTGGCTCGGTTTAACGCCCACGAGTTTGCCACCCTGGTTATCG ACATCCTCAGCGACGCCAAGAGGAGACAGCAGGGGAGTCCTCTGTCTGGTTCAAAAGACA ATGTGGAGCTCATACTGAAAACAATCAGTAACCAGCACAGTATTGAGAGTCAGGACAATG ACCAGCCAGACTATGACAGTGTGGCATCAGATGAAGAAACGGATCTGGAAGCCACTGCAA GCAAGGCACACAGGCAGAAGAGCCTAGATTCAGATTTATCAGATGGACCAGTCACTGTGC AGGAATTTATGGAGGTCAAAAACGCCCTAGTGGCTTCTGAGGCCAAGATACAACAGCTAA TGAAGGTGAATAACAACTTGAGTGACGAGCTGAGAATTATGCAGAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAACTTCAGTCTCTAAGTAATCATTTGTTTGAAGAACTTGCCATGGATGTGTACGATG AAGTTGACAGGCGAGAGACTGATGCAGTCTGGCTTGCCACGCAAAACCACAGCACCCTGG TGACCGAGACAACCGTTGTCCCCTTCCTTCCTGTCAATCCTGAGTACTCATCAACACGGA ACCAGGGCAGACAGAAATTGGCTCGGTTTAACGCCCACGAGTTTGCCACCCTGGTTATCG ACATCCTCAGCGACGCCAAGAGGAGACAGCAGGGGAGTCCTCTGTCTGGTTCAAAAGACA ATGTGGAGCTCATACTGAAAACAATCAGTAACCAGCACAGTATTGAGAGTCAGGACAATG ACCAGCCAGACTATGACAGTGTGGCATCAGATGAAGAAACGGATCTGGAAGCCACTGCAA GCAAGGCACACAGGCAGAAGAGCCTAGATTCAGATTTATCAGATGGACCAGTCACTGTGC AGGAATTTATGGAGGTCAAAAACGCCCTAGTGGCTTCTGAGGCCAAGATACAACAGCTAA TGAAGGTGAATAACAACTTGAGTGACGAGCTGAGAATTATGCAGAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 86-186, gnl|bosTau2|chr17 (35968958-35968858) | |
| 86-186, gnl|canFam2|chr26 (20219825-20219689) | |
| 86-186, gnl|danRer3|chr5 (10087948-10088067) | |
| 86-186, gnl|dasNov1|scaffold_123939 (7848-7712) | |
| 86-186, gnl|echTel1|scaffold_323529 (9785-9920) | |
| 86-186, gnl|fr1|chrUn (1803362-1803495) | |
| 86-186, gnl|galGal2|chr15 (6837100-6837245) | |
| 86-186, gnl|hg17|chr12 (108861795-108861930) | |
| 86-186, gnl|Hg17|chr12 (108861902-108861802) | |
| 86-186, gnl|loxAfr1|scaffold_5024 (43456-43592) | |
| 86-186, gnl|mm7|chr5 (113970068-113970204) | |
| 86-186, gnl|Mm7|chr5 (113970175-113970075) | |
| 86-186, gnl|monDom2|scaffold_192 (366757-366616) | |
| 86-186, gnl|oryCun1|scaffold_75825 (1014-878) | |
| 86-186, gnl|panTro1|chr10 (111455124-111455259) | |
| 86-186, gnl|rheMac2|chr11 (110876436-110876571) | |
| 86-186, gnl|rn3|chr12 (43002036-43001898) | |
| 86-186, gnl|tetNig1|chr12 (6395008-6395136) | |
| 86-186, gnl|xenTro1|scaffold_9 (671064-671192) | |
| 439-588, gnl|bosTau2|chr17 (35962220-35962071) | |
| 439-588, gnl|canFam2|chr26 (20224604-20224424) | |
| 439-588, gnl|danRer3|chr5 (10083486-10083663) | |
| 439-588, gnl|dasNov1|scaffold_2944 (14361-14541) | |
| 439-588, gnl|echTel1|scaffold_323529 (2859-3039) | |
| 439-588, gnl|fr1|chrUn (1802630-1802802) | |
| 439-588, gnl|galGal2|chr15 (6835670-6835842) | |
| 439-588, gnl|hg17|chr12 (108851687-108851866) | |
| 439-588, gnl|Hg17|chr12 (108851843-108851694) | |
| 439-588, gnl|loxAfr1|scaffold_32338 (49538-49358) | |
| 439-588, gnl|mm7|chr5 (113964559-113964738) | |
| 439-588, gnl|Mm7|chr5 (113964715-113964566) | |
| 439-588, gnl|monDom2|scaffold_192 (372449-372267) | |
| 439-588, gnl|oryCun1|scaffold_212548 (74604-74784) | |
| 439-588, gnl|panTro1|chr10 (111444933-111445112) | |
| 439-588, gnl|rheMac2|chr11 (110865566-110865746) | |
| 439-588, gnl|rn3|chr12 (43007548-43007369) | |
| 439-588, gnl|tetNig1|chr12 (6394301-6394475) | |
| 439-588, gnl|xenTro1|scaffold_9 (666667-666840) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 86-186, gnl|bosTau2|chr17 (35968958-35968858) | |
| 86-186, gnl|canFam2|chr26 (20219825-20219689) | |
| 86-186, gnl|danRer3|chr5 (10087948-10088067) | |
| 86-186, gnl|dasNov1|scaffold_123939 (7848-7712) | |
| 86-186, gnl|echTel1|scaffold_323529 (9785-9920) | |
| 86-186, gnl|fr1|chrUn (1803362-1803495) | |
| 86-186, gnl|galGal2|chr15 (6837100-6837245) | |
| 86-186, gnl|hg17|chr12 (108861795-108861930) | |
| 86-186, gnl|Hg17|chr12 (108861902-108861802) | |
| 86-186, gnl|loxAfr1|scaffold_5024 (43456-43592) | |
| 86-186, gnl|mm7|chr5 (113970068-113970204) | |
| 86-186, gnl|Mm7|chr5 (113970175-113970075) | |
| 86-186, gnl|monDom2|scaffold_192 (366757-366616) | |
| 86-186, gnl|oryCun1|scaffold_75825 (1014-878) | |
| 86-186, gnl|panTro1|chr10 (111455124-111455259) | |
| 86-186, gnl|rheMac2|chr11 (110876436-110876571) | |
| 86-186, gnl|rn3|chr12 (43002036-43001898) | |
| 86-186, gnl|tetNig1|chr12 (6395008-6395136) | |
| 86-186, gnl|xenTro1|scaffold_9 (671064-671192) | |
| 439-588, gnl|bosTau2|chr17 (35962220-35962071) | |
| 439-588, gnl|canFam2|chr26 (20224604-20224424) | |
| 439-588, gnl|danRer3|chr5 (10083486-10083663) | |
| 439-588, gnl|dasNov1|scaffold_2944 (14361-14541) | |
| 439-588, gnl|echTel1|scaffold_323529 (2859-3039) | |
| 439-588, gnl|fr1|chrUn (1802630-1802802) | |
| 439-588, gnl|galGal2|chr15 (6835670-6835842) | |
| 439-588, gnl|hg17|chr12 (108851687-108851866) | |
| 439-588, gnl|Hg17|chr12 (108851843-108851694) | |
| 439-588, gnl|loxAfr1|scaffold_32338 (49538-49358) | |
| 439-588, gnl|mm7|chr5 (113964559-113964738) | |
| 439-588, gnl|Mm7|chr5 (113964715-113964566) | |
| 439-588, gnl|monDom2|scaffold_192 (372449-372267) | |
| 439-588, gnl|oryCun1|scaffold_212548 (74604-74784) | |
| 439-588, gnl|panTro1|chr10 (111444933-111445112) | |
| 439-588, gnl|rheMac2|chr11 (110865566-110865746) | |
| 439-588, gnl|rn3|chr12 (43007548-43007369) | |
| 439-588, gnl|tetNig1|chr12 (6394301-6394475) | |
| 439-588, gnl|xenTro1|scaffold_9 (666667-666840) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| che (0.272628) | |
| col (0.195008) | |
| fty (0.17584) | |
| sug (0.127291) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.272628) | |
| col (0.195008) | |
| fty (0.17584) | |
| sug (0.127291) |