Non-Coding RNA Search

Ss1.1-rcol1030b_o15.5

Sequence:


               
               TTTTTTTTTTTTTTTCCTTTCCAGAGATTTTTATTGGCTTTTCACTGGGACATCATTTTT
AGTTACGGTTTTGTGCTGGTCCGGGATTCAGCCTCCATGGAGAATGAAAGGCAAGGACAC
AGCCCAGCCAAGTTCCCCGCCCCCTCCCCGCCCCCGACCTAAGCGCTCCGGGTCACAATG
ACAGCCGCCTCCACCGTCGTTGTCCCTCAAGTGTAGCTGTGCCACCTGCTCAGGCTCAGC
CGCAGCCCAGAGCAGGCCTAACGGCTGCACACCAACGGCGGTCCAGGCTGTGCCTTCGGC
TGCATAAAGGTCTCCTGGGGCTGGAAGGTACTCCGACCCAGGCTGACGCCCCCAAGCAAA
GAGAGCAGAGGAGCAGGGCCGTGGGCTGGACGCCGGCCGATGCATCACTTGCAGGTGGCG
TAGTAGAGCACACGCTCGTTGATGTAGCTGCGGATCTGCTCCACGTGCTTCTCCAGCCCC
GTCAGGTCCGCCGAGCGGAGCAAAATGGCCTGGCTCCCCCGAAGCAGCTCCGACTCCATG
TCCTTCATCCTGTCCATCATGGCCACGGCCTCCCCGAAGAGCTCCTCCGCCTCCATCTTG
ACGCTCAGGATCCGGCCGCCCTGCTCGCCCAGCCTGGGGCTCCGGCCCAACCGGTCCTTC
AGCTCCGCGTATTTTTGCTTTATTCTCTCAAATCCCTCCTGGGCACTCAGCGCCTGCTCG
CTGGCCTCCTCTGCCAGCTGCCGGGCCTGGGCCGCCTGCGCCTGCTGCAGCCTGGCCTGG
AGGCTAAGCTCCTCCATCCGCGCTCGGAGGCCACCCAGCTGCTCCATCCTGTCCATCACC
AGTCTCTCTGCTGGCCCCAGCACCTGCTGAACCTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTCCTTTCCAGAGATTTTTATTGGCTTTTCACTGGGACATCATTTTT
AGTTACGGTTTTGTGCTGGTCCGGGATTCAGCCTCCATGGAGAATGAAAGGCAAGGACAC
AGCCCAGCCAAGTTCCCCGCCCCCTCCCCGCCCCCGACCTAAGCGCTCCGGGTCACAATG
ACAGCCGCCTCCACCGTCGTTGTCCCTCAAGTGTAGCTGTGCCACCTGCTCAGGCTCAGC
CGCAGCCCAGAGCAGGCCTAACGGCTGCACACCAACGGCGGTCCAGGCTGTGCCTTCGGC
TGCATAAAGGTCTCCTGGGGCTGGAAGGTACTCCGACCCAGGCTGACGCCCCCAAGCAAA
GAGAGCAGAGGAGCAGGGCCGTGGGCTGGACGCCGGCCGATGCATCACTTGCAGGTGGCG
TAGTAGAGCACACGCTCGTTGATGTAGCTGCGGATCTGCTCCACGTGCTTCTCCAGCCCC
GTCAGGTCCGCCGAGCGGAGCAAAATGGCCTGGCTCCCCCGAAGCAGCTCCGACTCCATG
TCCTTCATCCTGTCCATCATGGCCACGGCCTCCCCGAAGAGCTCCTCCGCCTCCATCTTG
ACGCTCAGGATCCGGCCGCCCTGCTCGCCCAGCCTGGGGCTCCGGCCCAACCGGTCCTTC
AGCTCCGCGTATTTTTGCTTTATTCTCTCAAATCCCTCCTGGGCACTCAGCGCCTGCTCG
CTGGCCTCCTCTGCCAGCTGCCGGGCCTGGGCCGCCTGCGCCTGCTGCAGCCTGGCCTGG
AGGCTAAGCTCCTCCATCCGCGCTCGGAGGCCACCCAGCTGCTCCATCCTGTCCATCACC
AGTCTCTCTGCTGGCCCCAGCACCTGCTGAACCTCG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               318-434, - strand, RNAz p=0.79982
               

               
               695-813, + strand, RNAz p=0.897452

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               318-434, - strand, RNAz p=0.79982
               

               
               695-813, + strand, RNAz p=0.897452

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001017402, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001017402, -

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               264-542, gnl|bosTau2|chr16 (50638491-50638761)
               

               
               264-542, gnl|Hg17|chr1 (206176846-206177148)
               


               
               695-874, gnl|bosTau2|chr16 (50642424-50642603)
               

               
               695-874, gnl|canFam2|chr7 (11233513-11233808)
               

               
               695-874, gnl|dasNov1|scaffold_28398 (17667-17972)
               

               
               695-874, gnl|echTel1|scaffold_143297 (383-655)
               

               
               695-874, gnl|hg17|chr1 (206179047-206179344)
               

               
               695-874, gnl|Hg17|chr1 (206179149-206179328)
               

               
               695-874, gnl|loxAfr1|scaffold_231443 (230-534)
               

               
               695-874, gnl|mm7|chr1 (192892808-192892521)
               

               
               695-874, gnl|Mm7|chr1 (192892714-192892535)
               

               
               695-874, gnl|monDom2|scaffold_13 (12598086-12598387)
               

               
               695-874, gnl|oryCun1|scaffold_203548 (16136-15735)
               

               
               695-874, gnl|panTro1|chr1 (189793375-189793672)
               

               
               695-874, gnl|rn3|chr13 (109375728-109375451)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               264-542, gnl|bosTau2|chr16 (50638491-50638761)
               

               
               264-542, gnl|Hg17|chr1 (206176846-206177148)
               


               
               695-874, gnl|bosTau2|chr16 (50642424-50642603)
               

               
               695-874, gnl|canFam2|chr7 (11233513-11233808)
               

               
               695-874, gnl|dasNov1|scaffold_28398 (17667-17972)
               

               
               695-874, gnl|echTel1|scaffold_143297 (383-655)
               

               
               695-874, gnl|hg17|chr1 (206179047-206179344)
               

               
               695-874, gnl|Hg17|chr1 (206179149-206179328)
               

               
               695-874, gnl|loxAfr1|scaffold_231443 (230-534)
               

               
               695-874, gnl|mm7|chr1 (192892808-192892521)
               

               
               695-874, gnl|Mm7|chr1 (192892714-192892535)
               

               
               695-874, gnl|monDom2|scaffold_13 (12598086-12598387)
               

               
               695-874, gnl|oryCun1|scaffold_203548 (16136-15735)
               

               
               695-874, gnl|panTro1|chr1 (189793375-189793672)
               

               
               695-874, gnl|rn3|chr13 (109375728-109375451)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               col (0.195008)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               jej (0.0989218)

	318-434, - strand, RNAz p=0.79982
	695-813, + strand, RNAz p=0.897452

	264-542, gnl\|bosTau2\|chr16 (50638491-50638761)
	264-542, gnl\|Hg17\|chr1 (206176846-206177148)

	695-874, gnl\|bosTau2\|chr16 (50642424-50642603)
	695-874, gnl\|canFam2\|chr7 (11233513-11233808)
	695-874, gnl\|dasNov1\|scaffold_28398 (17667-17972)
	695-874, gnl\|echTel1\|scaffold_143297 (383-655)
	695-874, gnl\|hg17\|chr1 (206179047-206179344)
	695-874, gnl\|Hg17\|chr1 (206179149-206179328)
	695-874, gnl\|loxAfr1\|scaffold_231443 (230-534)
	695-874, gnl\|mm7\|chr1 (192892808-192892521)
	695-874, gnl\|Mm7\|chr1 (192892714-192892535)
	695-874, gnl\|monDom2\|scaffold_13 (12598086-12598387)
	695-874, gnl\|oryCun1\|scaffold_203548 (16136-15735)
	695-874, gnl\|panTro1\|chr1 (189793375-189793672)
	695-874, gnl\|rn3\|chr13 (109375728-109375451)