Non-Coding RNA Search

Ss1.1-rcol1031b_m15.5

Sequence:


               
               CCGCCGCCGTCCTTGCCGAGGACCCGCACACCGTGCTGGTGGAGTTCTCGTCCGTGGTAG
CCGACACCCAGGAGTACATCATTGAGGCCTCCGCAGACGACGCGGAGACCAGCGAAGCCG
CGGAGATCATCGAGGGCGCCCAGACAGAGGTGGATAGCCACATCATGAAGGTGGTGCAGC
AAATCGTGCACCAGGCCAGTGCCGGCCACCAGATCATCGTGCAGAACGTGACCATGGACC
AGGAGGTGGGGCTGGGCCCCGAGGCAGCCGCCGCCGACACCATCACCATCGCCACCCCCG
AGAGCCTGACGGAGCAGGTGGCCATGACGCTGGCCTCGGCCATCAGCGAGGGCACTGTGC
TCACGGCCCGTTCGGGCACGCGTGGCTCCGAGCAGGCCACTGTGACCATGGTCTCTTCGG
AGGACATTGAGATCCTGGAGCACGCGGGGGAGCTGGTCATCGCCTCGCCGGAGGGCCAGC
TCGAGGTGCAGACGGTTATCGTCTAGCCTGGCCGCCTGCAGGGTCCTGGTAGGCTGGGCA
GGGTGGGGGGCGAGGACCCCGAGTCCCCCAGCCCATGCCCGCCTGGCCGAGTACAGGGAA
GGTGGGGCGAGGTGTTCGGAGGGGATGTGGGGGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCGCCGTCCTTGCCGAGGACCCGCACACCGTGCTGGTGGAGTTCTCGTCCGTGGTAG
CCGACACCCAGGAGTACATCATTGAGGCCTCCGCAGACGACGCGGAGACCAGCGAAGCCG
CGGAGATCATCGAGGGCGCCCAGACAGAGGTGGATAGCCACATCATGAAGGTGGTGCAGC
AAATCGTGCACCAGGCCAGTGCCGGCCACCAGATCATCGTGCAGAACGTGACCATGGACC
AGGAGGTGGGGCTGGGCCCCGAGGCAGCCGCCGCCGACACCATCACCATCGCCACCCCCG
AGAGCCTGACGGAGCAGGTGGCCATGACGCTGGCCTCGGCCATCAGCGAGGGCACTGTGC
TCACGGCCCGTTCGGGCACGCGTGGCTCCGAGCAGGCCACTGTGACCATGGTCTCTTCGG
AGGACATTGAGATCCTGGAGCACGCGGGGGAGCTGGTCATCGCCTCGCCGGAGGGCCAGC
TCGAGGTGCAGACGGTTATCGTCTAGCCTGGCCGCCTGCAGGGTCCTGGTAGGCTGGGCA
GGGTGGGGGGCGAGGACCCCGAGTCCCCCAGCCCATGCCCGCCTGGCCGAGTACAGGGAA
GGTGGGGCGAGGTGTTCGGAGGGGATGTGGGGGTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               488-606, + strand, RNAz p=0.983986

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               488-606, + strand, RNAz p=0.983986

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004424, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004424, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               145-606, gnl|bosTau2|chr25 (5033993-5033532)
               

               
               145-606, gnl|Hg17|chr16 (2225213-2225665)
               

               
               145-606, gnl|Mm7|chr17 (22625167-22624707)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-606, gnl|bosTau2|chr25 (5033993-5033532)
               

               
               145-606, gnl|Hg17|chr16 (2225213-2225665)
               

               
               145-606, gnl|Mm7|chr17 (22625167-22624707)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               col (0.195008)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	145-606, gnl\|bosTau2\|chr25 (5033993-5033532)
	145-606, gnl\|Hg17\|chr16 (2225213-2225665)
	145-606, gnl\|Mm7\|chr17 (22625167-22624707)