Non-Coding RNA Search

Ss1.1-rcol1032b_g15.5

Sequence:


               
               GCGGCAGAAATGTGTTGCTTTTTACCTGCTCTCTGATCTCATCTTCTCATACCCACTTTT
CCCTCTTGTGAGTGAAGAAAATAAACTGACCCACTGGATTCCGAAGAGACAGTACACCTA
AATATATTGGACAGGCGCAGAAAGAGGAGGCCTGACCTTGGAAGCGGAACGGGGTCCTGC
CGCAGGTCCTTCCTGGCGGGTGACATTCAGCCAGCCAGTCGCAGCGACGGACTTTCACTC
CTAGAACCATGGCCCAGTTTGTCCGTAACCTCGCGGAGAAGGCACCGGTCTTGGTTAACG
CTGCTGTGACTTACTCGAAGCCTCGATTGGCCACATTTTGGCACTATGCCAAGGTGGAGC
TGGTTCCTCCAACCCCTGCTGAGATCCCTACAGCTATTCAGAGCCTGAAAAAAATAGTCA
ATAGTGCTCAAACTGGTAGCTTCAAACAGCTCACAGTTAAGGAAGCTCTGCTGAATGGTT
TGGTGGCCACCGAGGTGTTGATGTGGTTTTATGTCGGCGAGATCATAGGCAAGCGTGGCA
TCATTGGCTATGATGTTTAAAGACCAATCTTTTAACATGTCATTATATTTGGTTTATTAT
TTCGGTGTTCTTGGACCATGTGTGATCAGACTGGTATTTGAATAAAATAAGACAGCGTGT
CAAAATCAGTATTTTCTCTATCAAACACTGTATGGAAGGTCACGATTTTTTTTTTTTTAA
ATTAAAGTATAGTGATTTACAATGAAAAAAAAAAAAGCTACAGTTTCTCTTGATGTTAAA
TTATGTTCTCTTTTGCTTTAATACATTAATGCAGCTCTAAATGCATGTCTTTGTTTAGTC
TGCAATTGGAATATTGCAAGCAACCTGGTAACATTTGATGGTAACATTTGATTTTGAAGG
CTTGAAATAAATGATAATTAAGCTTTATTTCTAGAAAAGTTGGGGAAAGACCTTGAGAAA
ACTAGAACTTGCTCCAGTAGAAGAAATAGTAATACCATGAGCCAAATATGATGAAGTTAA
ATTATGTAGTATAAAGAATAAAATTTGGACTGTTTTTCTTTGCTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCAGAAATGTGTTGCTTTTTACCTGCTCTCTGATCTCATCTTCTCATACCCACTTTT
CCCTCTTGTGAGTGAAGAAAATAAACTGACCCACTGGATTCCGAAGAGACAGTACACCTA
AATATATTGGACAGGCGCAGAAAGAGGAGGCCTGACCTTGGAAGCGGAACGGGGTCCTGC
CGCAGGTCCTTCCTGGCGGGTGACATTCAGCCAGCCAGTCGCAGCGACGGACTTTCACTC
CTAGAACCATGGCCCAGTTTGTCCGTAACCTCGCGGAGAAGGCACCGGTCTTGGTTAACG
CTGCTGTGACTTACTCGAAGCCTCGATTGGCCACATTTTGGCACTATGCCAAGGTGGAGC
TGGTTCCTCCAACCCCTGCTGAGATCCCTACAGCTATTCAGAGCCTGAAAAAAATAGTCA
ATAGTGCTCAAACTGGTAGCTTCAAACAGCTCACAGTTAAGGAAGCTCTGCTGAATGGTT
TGGTGGCCACCGAGGTGTTGATGTGGTTTTATGTCGGCGAGATCATAGGCAAGCGTGGCA
TCATTGGCTATGATGTTTAAAGACCAATCTTTTAACATGTCATTATATTTGGTTTATTAT
TTCGGTGTTCTTGGACCATGTGTGATCAGACTGGTATTTGAATAAAATAAGACAGCGTGT
CAAAATCAGTATTTTCTCTATCAAACACTGTATGGAAGGTCACGATTTTTTTTTTTTTAA
ATTAAAGTATAGTGATTTACAATGAAAAAAAAAAAAGCTACAGTTTCTCTTGATGTTAAA
TTATGTTCTCTTTTGCTTTAATACATTAATGCAGCTCTAAATGCATGTCTTTGTTTAGTC
TGCAATTGGAATATTGCAAGCAACCTGGTAACATTTGATGGTAACATTTGATTTTGAAGG
CTTGAAATAAATGATAATTAAGCTTTATTTCTAGAAAAGTTGGGGAAAGACCTTGAGAAA
ACTAGAACTTGCTCCAGTAGAAGAAATAGTAATACCATGAGCCAAATATGATGAAGTTAA
ATTATGTAGTATAAAGAATAAAATTTGGACTGTTTTTCTTTGCTAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q7YS30_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7YS30_PIG

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               4-303, gnl|bosTau2|chr15 (15126586-15126285)
               

               
               4-303, gnl|Hg17|chr11 (117777347-117777645)
               

               
               4-303, gnl|Mm7|chr9 (44855253-44854952)
               


               
               457-713, gnl|bosTau2|chr15 (15118475-15118221)
               

               
               457-713, gnl|Hg17|chr11 (117784920-117785173)
               

               
               457-713, gnl|Mm7|chr9 (44847816-44847570)
               


               
               760-1068, gnl|bosTau2|chr15 (15118232-15117913)
               

               
               760-1068, gnl|Hg17|chr11 (117785162-117785466)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-303, gnl|bosTau2|chr15 (15126586-15126285)
               

               
               4-303, gnl|Hg17|chr11 (117777347-117777645)
               

               
               4-303, gnl|Mm7|chr9 (44855253-44854952)
               


               
               457-713, gnl|bosTau2|chr15 (15118475-15118221)
               

               
               457-713, gnl|Hg17|chr11 (117784920-117785173)
               

               
               457-713, gnl|Mm7|chr9 (44847816-44847570)
               


               
               760-1068, gnl|bosTau2|chr15 (15118232-15117913)
               

               
               760-1068, gnl|Hg17|chr11 (117785162-117785466)

Expressed library(ies): 77 entry(ies)

More info

Expressed library(ies): 77 entry(ies)

Help | Less info


               
               che (4.90731)
               

               
               cki (2.80899)
               

               
               sme (2.74893)
               

               
               vin (1.99534)
               

               
               cst (1.82047)
               

               
               duo (1.72801)
               

               
               hlv (1.67108)
               

               
               hea (1.43149)
               

               
               ssp (1.3552)
               

               
               fco (1.25766)
               

               
               cte (1.17096)
               

               
               nms (1.06929)
               

               
               bfe (1.049)
               

               
               cut (1.01954)
               

               
               cje (0.991408)
               

               
               ece (0.917221)
               

               
               sto (0.899119)
               

               
               thg (0.887536)
               

               
               ill (0.877963)
               

               
               ton (0.877501)
               

               
               mas (0.84122)
               

               
               nbm (0.794597)
               

               
               col (0.780031)
               

               
               elu (0.770713)
               

               
               cag (0.755972)
               

               
               cmu (0.745573)
               

               
               cbe (0.717703)
               

               
               csk (0.70373)
               

               
               fbs (0.701385)
               

               
               eje (0.691836)
               

               
               spc (0.680195)
               

               
               kid (0.648677)
               

               
               eep (0.61282)
               

               
               isp (0.601504)
               

               
               nlu (0.575043)
               

               
               nmm (0.531209)
               

               
               pro (0.512033)
               

               
               sug (0.509165)
               

               
               med (0.465008)
               

               
               fat (0.442282)
               

               
               pty (0.428143)
               

               
               aor (0.390549)
               

               
               nep (0.36785)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               mga (0.32041)
               

               
               lin (0.291206)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

Expressed library(ies): 77 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (4.90731)
               

               
               cki (2.80899)
               

               
               sme (2.74893)
               

               
               vin (1.99534)
               

               
               cst (1.82047)
               

               
               duo (1.72801)
               

               
               hlv (1.67108)
               

               
               hea (1.43149)
               

               
               ssp (1.3552)
               

               
               fco (1.25766)
               

               
               cte (1.17096)
               

               
               nms (1.06929)
               

               
               bfe (1.049)
               

               
               cut (1.01954)
               

               
               cje (0.991408)
               

               
               ece (0.917221)
               

               
               sto (0.899119)
               

               
               thg (0.887536)
               

               
               ill (0.877963)
               

               
               ton (0.877501)
               

               
               mas (0.84122)
               

               
               nbm (0.794597)
               

               
               col (0.780031)
               

               
               elu (0.770713)
               

               
               cag (0.755972)
               

               
               cmu (0.745573)
               

               
               cbe (0.717703)
               

               
               csk (0.70373)
               

               
               fbs (0.701385)
               

               
               eje (0.691836)
               

               
               spc (0.680195)
               

               
               kid (0.648677)
               

               
               eep (0.61282)
               

               
               isp (0.601504)
               

               
               nlu (0.575043)
               

               
               nmm (0.531209)
               

               
               pro (0.512033)
               

               
               sug (0.509165)
               

               
               med (0.465008)
               

               
               fat (0.442282)
               

               
               pty (0.428143)
               

               
               aor (0.390549)
               

               
               nep (0.36785)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               mga (0.32041)
               

               
               lin (0.291206)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

	4-303, gnl\|bosTau2\|chr15 (15126586-15126285)
	4-303, gnl\|Hg17\|chr11 (117777347-117777645)
	4-303, gnl\|Mm7\|chr9 (44855253-44854952)

	457-713, gnl\|bosTau2\|chr15 (15118475-15118221)
	457-713, gnl\|Hg17\|chr11 (117784920-117785173)
	457-713, gnl\|Mm7\|chr9 (44847816-44847570)

	760-1068, gnl\|bosTau2\|chr15 (15118232-15117913)
	760-1068, gnl\|Hg17\|chr11 (117785162-117785466)

	che (4.90731)
	cki (2.80899)
	sme (2.74893)
	vin (1.99534)
	cst (1.82047)
	duo (1.72801)
	hlv (1.67108)
	hea (1.43149)
	ssp (1.3552)
	fco (1.25766)
	cte (1.17096)
	nms (1.06929)
	bfe (1.049)
	cut (1.01954)
	cje (0.991408)
	ece (0.917221)
	sto (0.899119)
	thg (0.887536)
	ill (0.877963)
	ton (0.877501)
	mas (0.84122)
	nbm (0.794597)
	col (0.780031)
	elu (0.770713)
	cag (0.755972)
	cmu (0.745573)
	cbe (0.717703)
	csk (0.70373)
	fbs (0.701385)
	eje (0.691836)
	spc (0.680195)
	kid (0.648677)
	eep (0.61282)
	isp (0.601504)
	nlu (0.575043)
	nmm (0.531209)
	pro (0.512033)
	sug (0.509165)
	med (0.465008)
	fat (0.442282)
	pty (0.428143)
	aor (0.390549)
	nep (0.36785)
	fhi (0.339155)
	nco (0.323468)
	mga (0.32041)
	lin (0.291206)
	cga (0.279096)
	nca (0.273748)
	lyg (0.266205)
	ova (0.258264)
	cly (0.241284)
	ebs (0.236602)
	jca (0.22792)
	tes (0.207814)
	jej (0.197844)
	ldo (0.194005)
	sag (0.182715)
	mgm (0.180343)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	mcp (0.170648)
	eye (0.170503)
	nje (0.16592)
	tbr (0.154178)
	ski (0.146735)
	hyp (0.142837)
	ste (0.135208)
	pla (0.133672)
	ute (0.132784)
	cov (0.132153)
	ese (0.126502)
	bla (0.124347)
	eru (0.120048)
	pgl (0.118483)
	ecc (0.115035)