Ss1.1-rcol1032b_h6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCTGAAAAAGGCCCAGGACGTTCTGGTACAGGAGATGGAAGTGGTAAAACAAGGTATG AGCCATGGAGAACTCTCAAGTGAAGCTTATAACCAGGTGTGGGAAGAATGCTACAGTCAA GTTTTGTATCTTCCTGGGCAGAGCCGCTACACACGGGCCAACCTAGCCAGCAAAAAGGAC AGAATCGAGTCCCTGGAAAAGAGGCTTGAGATAAACAGGGGTCACATGACAACAGAAGCC AAGAGAGCTGCAAAGATGGAAAAGAAGATGAAAATTTTGCTTGGGGGCTACCAGTCTCGT GCAATGGGGCTTATGAAACAGTTGAATGACTTATGGGACCAAATTGAGCAGGCTTACTTG GAGTTACGCACTTTTGAAGAACTCAAGAAACATGAAGACTCTGCTATTCCCCGGAGGCTA GAGTGTCTAAAAGAAGATGTTCAGCGACAACAGGAAAGAGAAAAGGAACTTCAGCATAGA TATGCTGATTTGCTGCTGGAGAAAGAGACTCTAAAGGCTAAATTCTGAAGCATAGTTTGT ATTCTGTCGCAAGATGAATTAACTGCTAGTGTTCACACCCTGGAAGGCCGAAACTGATGT TTATCTTCCTCGACAAATTTGCCCACAATCGGTGGTTTTTCAGTTATTTTAAATGATATC CATCTCACACATTTATGTATAAAGACTTAACCCCACAGGACATTTTAGGGTTTAAATTAT TAAGACGATCATTCTTTCAGCAGTGTCATCTTTGCAAATTTTTTTTAGTTTTGGCCTTTA ATTTTAAAAGCCTGATTTTAAAGTGCTGCCTGTGCGTAAACTCTTGAATAAAAACAAAAT TAAAAAATTAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCTGAAAAAGGCCCAGGACGTTCTGGTACAGGAGATGGAAGTGGTAAAACAAGGTATG AGCCATGGAGAACTCTCAAGTGAAGCTTATAACCAGGTGTGGGAAGAATGCTACAGTCAA GTTTTGTATCTTCCTGGGCAGAGCCGCTACACACGGGCCAACCTAGCCAGCAAAAAGGAC AGAATCGAGTCCCTGGAAAAGAGGCTTGAGATAAACAGGGGTCACATGACAACAGAAGCC AAGAGAGCTGCAAAGATGGAAAAGAAGATGAAAATTTTGCTTGGGGGCTACCAGTCTCGT GCAATGGGGCTTATGAAACAGTTGAATGACTTATGGGACCAAATTGAGCAGGCTTACTTG GAGTTACGCACTTTTGAAGAACTCAAGAAACATGAAGACTCTGCTATTCCCCGGAGGCTA GAGTGTCTAAAAGAAGATGTTCAGCGACAACAGGAAAGAGAAAAGGAACTTCAGCATAGA TATGCTGATTTGCTGCTGGAGAAAGAGACTCTAAAGGCTAAATTCTGAAGCATAGTTTGT ATTCTGTCGCAAGATGAATTAACTGCTAGTGTTCACACCCTGGAAGGCCGAAACTGATGT TTATCTTCCTCGACAAATTTGCCCACAATCGGTGGTTTTTCAGTTATTTTAAATGATATC CATCTCACACATTTATGTATAAAGACTTAACCCCACAGGACATTTTAGGGTTTAAATTAT TAAGACGATCATTCTTTCAGCAGTGTCATCTTTGCAAATTTTTTTTAGTTTTGGCCTTTA ATTTTAAAAGCCTGATTTTAAAGTGCTGCCTGTGCGTAAACTCTTGAATAAAAACAAAAT TAAAAAATTAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 11-210, gnl|bosTau2|chr23 (17415909-17415710) | |
| 11-210, gnl|canFam2|chr12 (15811741-15811954) | |
| 11-210, gnl|danRer3|chrNA (36370950-36370739) | |
| 11-210, gnl|dasNov1|scaffold_98776 (4292-4079) | |
| 11-210, gnl|echTel1|scaffold_274846 (652-865) | |
| 11-210, gnl|fr1|chrUn (179340877-179341178) | |
| 11-210, gnl|galGal2|chr3 (106755283-106755493) | |
| 11-210, gnl|hg17|chr6 (44505425-44505638) | |
| 11-210, gnl|Hg17|chr6 (44505426-44505625) | |
| 11-210, gnl|loxAfr1|scaffold_14802 (9459-9246) | |
| 11-210, gnl|mm7|chr17 (43534200-43533987) | |
| 11-210, gnl|Mm7|chr17 (43534197-43533998) | |
| 11-210, gnl|monDom2|scaffold_0 (196349945-196349732) | |
| 11-210, gnl|oryCun1|scaffold_185527 (85223-85438) | |
| 11-210, gnl|panTro1|chr5 (45115349-45115562) | |
| 11-210, gnl|rheMac2|chr4 (44354612-44354825) | |
| 11-210, gnl|rn3|chr9 (11188682-11188895) | |
| 11-210, gnl|tetNig1|chr17 (9231946-9231662) | |
| 11-210, gnl|xenTro1|scaffold_996 (416304-416517) | |
| 422-854, gnl|bosTau2|chr23 (17402202-17401772) | |
| 422-854, gnl|Hg17|chr6 (44522320-44522761) | |
| 422-854, gnl|Mm7|chr17 (43521711-43521287) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-210, gnl|bosTau2|chr23 (17415909-17415710) | |
| 11-210, gnl|canFam2|chr12 (15811741-15811954) | |
| 11-210, gnl|danRer3|chrNA (36370950-36370739) | |
| 11-210, gnl|dasNov1|scaffold_98776 (4292-4079) | |
| 11-210, gnl|echTel1|scaffold_274846 (652-865) | |
| 11-210, gnl|fr1|chrUn (179340877-179341178) | |
| 11-210, gnl|galGal2|chr3 (106755283-106755493) | |
| 11-210, gnl|hg17|chr6 (44505425-44505638) | |
| 11-210, gnl|Hg17|chr6 (44505426-44505625) | |
| 11-210, gnl|loxAfr1|scaffold_14802 (9459-9246) | |
| 11-210, gnl|mm7|chr17 (43534200-43533987) | |
| 11-210, gnl|Mm7|chr17 (43534197-43533998) | |
| 11-210, gnl|monDom2|scaffold_0 (196349945-196349732) | |
| 11-210, gnl|oryCun1|scaffold_185527 (85223-85438) | |
| 11-210, gnl|panTro1|chr5 (45115349-45115562) | |
| 11-210, gnl|rheMac2|chr4 (44354612-44354825) | |
| 11-210, gnl|rn3|chr9 (11188682-11188895) | |
| 11-210, gnl|tetNig1|chr17 (9231946-9231662) | |
| 11-210, gnl|xenTro1|scaffold_996 (416304-416517) | |
| 422-854, gnl|bosTau2|chr23 (17402202-17401772) | |
| 422-854, gnl|Hg17|chr6 (44522320-44522761) | |
| 422-854, gnl|Mm7|chr17 (43521711-43521287) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| ski (0.29347) | |
| pla (0.267344) | |
| pan (0.23596) | |
| spc (0.226732) | |
| aor (0.195274) | |
| col (0.195008) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fty (0.17584) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| eli (0.151814) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) | |
| ecc (0.115035) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ski (0.29347) | |
| pla (0.267344) | |
| pan (0.23596) | |
| spc (0.226732) | |
| aor (0.195274) | |
| col (0.195008) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fty (0.17584) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| eli (0.151814) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) | |
| ecc (0.115035) |