Ss1.1-rcov09b_e1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTTTTGTGGAATCTGCCAACATGTGGACTCTGCCAACCTGGTGACGAGGGCTTGTTTT CCGTTTAGTCTCCTGGAGGAGGACTCCGAGGAGGAGGGAGACTTGTGCCGCATCTGTCAG ATGGCCGGGGGCTCCCCCACCAACCCCCTGCTGGCGCCCTGCGGCTGTGTGGGAAGCCTG CAGTTCGTCCATCAAGAGTGCCTGAAAAAATGGCTGAAAGTGAAAATAACATCAGGAGCA GATCTTGGCGCTGTGAAGACCTGTGAGATGTGTAAGCAAGGCCTGCTGGTCGACCTGGGT GATTTTAACGTGACCGAGTTCTACCAGAAGCACCAGCAGTCCCGGGCACGAAATGAGCTG ATGAACTCAGGCCTGTACCTGGTGCTGCTGCTTCACCTCTATGAACTGAGGTTTGCAGAA CTCATGAGACTCAACCACACCCGGGTCGCGCAAGAGAGGTTGTCAAGAAATTACCCACAA CCCAGACCGGAAGAAAATGAAAGGTCCGAGTTGGGAGATGGAAATGAAAGCAACATCTGT GAACGCAACGGCCGGGTCGTCTAGCAAAGGAGCTCACTGTGGAGCGGGGCGGAAACTTCT CCCAGCCGCCCTTTCTCCTTCCCCAGGTGCCTCCCTTCCTCCTCCTCTTTACTGATTGAA ACCAGTGTGTTCACAGGTAGCTTTTCACCTTGTGCCACTCTCTCTTCTTGGGGTCTGGCC CGAGCATCTACGGACGGCAACCGCCAGCAGCCCAGCCCCACACAGCTCAAGCCAAGCCAG CTGGGGTTGGGTGGGCCCCACAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTTTTGTGGAATCTGCCAACATGTGGACTCTGCCAACCTGGTGACGAGGGCTTGTTTT CCGTTTAGTCTCCTGGAGGAGGACTCCGAGGAGGAGGGAGACTTGTGCCGCATCTGTCAG ATGGCCGGGGGCTCCCCCACCAACCCCCTGCTGGCGCCCTGCGGCTGTGTGGGAAGCCTG CAGTTCGTCCATCAAGAGTGCCTGAAAAAATGGCTGAAAGTGAAAATAACATCAGGAGCA GATCTTGGCGCTGTGAAGACCTGTGAGATGTGTAAGCAAGGCCTGCTGGTCGACCTGGGT GATTTTAACGTGACCGAGTTCTACCAGAAGCACCAGCAGTCCCGGGCACGAAATGAGCTG ATGAACTCAGGCCTGTACCTGGTGCTGCTGCTTCACCTCTATGAACTGAGGTTTGCAGAA CTCATGAGACTCAACCACACCCGGGTCGCGCAAGAGAGGTTGTCAAGAAATTACCCACAA CCCAGACCGGAAGAAAATGAAAGGTCCGAGTTGGGAGATGGAAATGAAAGCAACATCTGT GAACGCAACGGCCGGGTCGTCTAGCAAAGGAGCTCACTGTGGAGCGGGGCGGAAACTTCT CCCAGCCGCCCTTTCTCCTTCCCCAGGTGCCTCCCTTCCTCCTCCTCTTTACTGATTGAA ACCAGTGTGTTCACAGGTAGCTTTTCACCTTGTGCCACTCTCTCTTCTTGGGGTCTGGCC CGAGCATCTACGGACGGCAACCGCCAGCAGCCCAGCCCCACACAGCTCAAGCCAAGCCAG CTGGGGTTGGGTGGGCCCCACAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 45-160, - strand, RNAz p=0.768383 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 45-160, - strand, RNAz p=0.768383 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 5-236, gnl|bosTau2|chr19 (39526541-39526317) | |
| 5-236, gnl|canFam2|chr9 (14027674-14027875) | |
| 5-236, gnl|dasNov1|scaffold_22716 (44043-43861) | |
| 5-236, gnl|echTel1|scaffold_226100 (2537-2355) | |
| 5-236, gnl|fr1|chrUn (130412437-130412636) | |
| 5-236, gnl|hg17|chr17 (58156019-58156218) | |
| 5-236, gnl|Hg17|chr17 (58156255-58156030) | |
| 5-236, gnl|loxAfr1|scaffold_45421 (594-792) | |
| 5-236, gnl|mm7|chr11 (105494446-105494647) | |
| 5-236, gnl|Mm7|chr11 (105494671-105494457) | |
| 5-236, gnl|monDom2|scaffold_18 (37405253-37405055) | |
| 5-236, gnl|oryCun1|scaffold_195815 (8428-8245) | |
| 5-236, gnl|panTro1|chr19 (47003036-47002838) | |
| 5-236, gnl|rheMac2|chr16 (58234974-58235172) | |
| 5-236, gnl|rn3|chr10 (94802133-94802331) | |
| 5-236, gnl|tetNig1|chr5 (9365990-9365794) | |
| 345-462, gnl|bosTau2|chr19 (39515844-39515727) | |
| 345-462, gnl|Hg17|chr17 (58142438-58142321) | |
| 345-462, gnl|Mm7|chr11 (105481017-105480900) | |
| 505-763, gnl|bosTau2|chr19 (39505985-39505727) | |
| 505-763, gnl|Hg17|chr17 (58132849-58132578) | |
| 505-763, gnl|Mm7|chr11 (105470238-105469992) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-236, gnl|bosTau2|chr19 (39526541-39526317) | |
| 5-236, gnl|canFam2|chr9 (14027674-14027875) | |
| 5-236, gnl|dasNov1|scaffold_22716 (44043-43861) | |
| 5-236, gnl|echTel1|scaffold_226100 (2537-2355) | |
| 5-236, gnl|fr1|chrUn (130412437-130412636) | |
| 5-236, gnl|hg17|chr17 (58156019-58156218) | |
| 5-236, gnl|Hg17|chr17 (58156255-58156030) | |
| 5-236, gnl|loxAfr1|scaffold_45421 (594-792) | |
| 5-236, gnl|mm7|chr11 (105494446-105494647) | |
| 5-236, gnl|Mm7|chr11 (105494671-105494457) | |
| 5-236, gnl|monDom2|scaffold_18 (37405253-37405055) | |
| 5-236, gnl|oryCun1|scaffold_195815 (8428-8245) | |
| 5-236, gnl|panTro1|chr19 (47003036-47002838) | |
| 5-236, gnl|rheMac2|chr16 (58234974-58235172) | |
| 5-236, gnl|rn3|chr10 (94802133-94802331) | |
| 5-236, gnl|tetNig1|chr5 (9365990-9365794) | |
| 345-462, gnl|bosTau2|chr19 (39515844-39515727) | |
| 345-462, gnl|Hg17|chr17 (58142438-58142321) | |
| 345-462, gnl|Mm7|chr11 (105481017-105480900) | |
| 505-763, gnl|bosTau2|chr19 (39505985-39505727) | |
| 505-763, gnl|Hg17|chr17 (58132849-58132578) | |
| 505-763, gnl|Mm7|chr11 (105470238-105469992) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) |