Non-Coding RNA Search

Ss1.1-rcov11b_g3.5

Sequence:


               
               CATTGGTCACCATCCACTCGGGTTGGGCATCCCTTCGTCCCTCGGGTGCCCGATCCTTGG
GTCGGCAAGCCCCACTGTCGGGTTTTCTAGAAGTTCCGTTCCATGTGTGATGTTCATTGG
GTTGTCGGCTGCCTTTTGGATCCCTCACTTGTGCCCGCTTTTCCCCATGTAGTGATGATT
TGTGAAGATCAGGTGCGTAACTGGACTCCAAGGATGGATGCTGTCGACGGTCGGGTGGTG
TGGCCCTCATTTCCGGAACACCTTGTGGACCGGCGGGGGGGCCGTTCCCGTCGCTGCTGG
GGTCATATTCTGGGACCGAACCGTCTCCCCGCTTCAGAAACAGACGCACCCTGCGGCCAC
CATTCTTAATCAGTTCTATAGCCCGAGAATGCTTCATGTTTTTGGTGGTCTCTCCATTGA
TCTCTAAAATTTCATCACCAACCCTCATCTTTCCACACCTTTCTGCAGGACCATCCTCTG
CACATTCTCAACATAGCACTAGTCAGGATGATGTGGCAGGTGTAAAAGAAGCCAATCAAG
GATTTCCTGCTGTACAGCTTGCTGATGCTCAGGTTGTTTTCAAACCTCTTCTGAGTCATA
CAGGGATTCAGTCACAGGATGCAATGCCACTTTGCTACCGAATGTACTTTGGGGAACACC
TTTCATTTTCGGGAACTTTGGACTGCCTTAGAGCAGATATCGTGGATTCAGACACAGCCA
AGGAGAGAAAAGGCAAAAGAGCAAGAAGGCAAGGCCATGTGAATCTTCCTCCACTTGAGT
TCAAACCAGCATTAATGTTGGAAACCTTTAGCATCAGCGCTGTTGTCATGGAAAAGTCTG
TGTGTACCCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTGGTCACCATCCACTCGGGTTGGGCATCCCTTCGTCCCTCGGGTGCCCGATCCTTGG
GTCGGCAAGCCCCACTGTCGGGTTTTCTAGAAGTTCCGTTCCATGTGTGATGTTCATTGG
GTTGTCGGCTGCCTTTTGGATCCCTCACTTGTGCCCGCTTTTCCCCATGTAGTGATGATT
TGTGAAGATCAGGTGCGTAACTGGACTCCAAGGATGGATGCTGTCGACGGTCGGGTGGTG
TGGCCCTCATTTCCGGAACACCTTGTGGACCGGCGGGGGGGCCGTTCCCGTCGCTGCTGG
GGTCATATTCTGGGACCGAACCGTCTCCCCGCTTCAGAAACAGACGCACCCTGCGGCCAC
CATTCTTAATCAGTTCTATAGCCCGAGAATGCTTCATGTTTTTGGTGGTCTCTCCATTGA
TCTCTAAAATTTCATCACCAACCCTCATCTTTCCACACCTTTCTGCAGGACCATCCTCTG
CACATTCTCAACATAGCACTAGTCAGGATGATGTGGCAGGTGTAAAAGAAGCCAATCAAG
GATTTCCTGCTGTACAGCTTGCTGATGCTCAGGTTGTTTTCAAACCTCTTCTGAGTCATA
CAGGGATTCAGTCACAGGATGCAATGCCACTTTGCTACCGAATGTACTTTGGGGAACACC
TTTCATTTTCGGGAACTTTGGACTGCCTTAGAGCAGATATCGTGGATTCAGACACAGCCA
AGGAGAGAAAAGGCAAAAGAGCAAGAAGGCAAGGCCATGTGAATCTTCCTCCACTTGAGT
TCAAACCAGCATTAATGTTGGAAACCTTTAGCATCAGCGCTGTTGTCATGGAAAAGTCTG
TGTGTACCCCTC

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               1-304, gnl|bosTau2|chr22 (26354559-26354874)
               

               
               1-304, gnl|Hg17|chr3 (65317533-65317848)
               

               
               1-304, gnl|Mm7|chr6 (93766789-93767104)
               


               
               538-749, gnl|bosTau2|chr17 (20593892-20593681)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-304, gnl|bosTau2|chr22 (26354559-26354874)
               

               
               1-304, gnl|Hg17|chr3 (65317533-65317848)
               

               
               1-304, gnl|Mm7|chr6 (93766789-93767104)
               


               
               538-749, gnl|bosTau2|chr17 (20593892-20593681)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cov (0.132153)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	1-304, gnl\|bosTau2\|chr22 (26354559-26354874)
	1-304, gnl\|Hg17\|chr3 (65317533-65317848)
	1-304, gnl\|Mm7\|chr6 (93766789-93767104)

	538-749, gnl\|bosTau2\|chr17 (20593892-20593681)