Non-Coding RNA Search

Ss1.1-rcov13b_e20.5

Sequence:


               
               AGCAGATTAACCTCAAAAACCCTGCCTGGCCGGCAGATTTCAAGTTTAAAAAAAAAAAAA
AAAAATGGGGGGAGGAGGTACTTTTTTTTTTTTCTAAACGTCTTTGAGGAAAATTCTTTT
TTTTTTTTTTTTTTTTAATACTTTTGGCCGAAGTTTTCATGAGATGTCACTCACTTCCTG
TCTTCCATTTTAAACTGGTAACAACTCAAATGTCAGCTCTGGATTGGGAGCGGGACAAGC
CCCTCCGTTTTTAGTTGAAAAGAATCAGCTGCTTGCCGGTTGCCTCCTGTGGTGTGGGTG
TCTTTTCCATTCCTGAATCATCTCGAGATCTCAAAGGTAACTATGCAAAGAATCCAAACG
GTTCTGAATGCGAAGGCACAACCCCCCACAGAGTCCCCTGTGGCTGACCTGTGTCACCTC
TTGGGAGGGTCCCCAAATAATTCGATTAGAATAGGGGTTTAGAATCCCTGGAAGGGGGAG
CCCTTGGATTCTTTCAGGAAATATATTAGGAGGGCTGCTCCTAAAGGCACGGGCTGCCTC
CCTGGGGAGTGGAGGCTACGGCTTTCTTTTTGCCATGATGTCCATGAAGAGGTTTGCCAT
TAGAGCAGACCCCATCCGTCTGTGAGGAACGTGTGCATTTTCTGTAGCTGTTTGCTGTTT
CATTTTGAGCTGTACTGTTCTTTAATGGCTGTCTTGCCCTTTAAAAAAGAAAAAAGAAAA
AAATGAAAAATGAAAAAAAAAAGGTTTGTTTAGTTTACTGTGAAATGAACTGTATGGCTT
ATTTACAGTATTTTTAATTCTTAATAAACACTTGAGCTTTGTTATGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGATTAACCTCAAAAACCCTGCCTGGCCGGCAGATTTCAAGTTTAAAAAAAAAAAAA
AAAAATGGGGGGAGGAGGTACTTTTTTTTTTTTCTAAACGTCTTTGAGGAAAATTCTTTT
TTTTTTTTTTTTTTTTAATACTTTTGGCCGAAGTTTTCATGAGATGTCACTCACTTCCTG
TCTTCCATTTTAAACTGGTAACAACTCAAATGTCAGCTCTGGATTGGGAGCGGGACAAGC
CCCTCCGTTTTTAGTTGAAAAGAATCAGCTGCTTGCCGGTTGCCTCCTGTGGTGTGGGTG
TCTTTTCCATTCCTGAATCATCTCGAGATCTCAAAGGTAACTATGCAAAGAATCCAAACG
GTTCTGAATGCGAAGGCACAACCCCCCACAGAGTCCCCTGTGGCTGACCTGTGTCACCTC
TTGGGAGGGTCCCCAAATAATTCGATTAGAATAGGGGTTTAGAATCCCTGGAAGGGGGAG
CCCTTGGATTCTTTCAGGAAATATATTAGGAGGGCTGCTCCTAAAGGCACGGGCTGCCTC
CCTGGGGAGTGGAGGCTACGGCTTTCTTTTTGCCATGATGTCCATGAAGAGGTTTGCCAT
TAGAGCAGACCCCATCCGTCTGTGAGGAACGTGTGCATTTTCTGTAGCTGTTTGCTGTTT
CATTTTGAGCTGTACTGTTCTTTAATGGCTGTCTTGCCCTTTAAAAAAGAAAAAAGAAAA
AAATGAAAAATGAAAAAAAAAAGGTTTGTTTAGTTTACTGTGAAATGAACTGTATGGCTT
ATTTACAGTATTTTTAATTCTTAATAAACACTTGAGCTTTGTTATGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-827, gnl|bosTau2|chr5 (42106111-42105298)
               

               
               1-827, gnl|Hg17|chr12 (105134966-105134126)
               

               
               1-827, gnl|Mm7|chr10 (84068500-84067675)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-827, gnl|bosTau2|chr5 (42106111-42105298)
               

               
               1-827, gnl|Hg17|chr12 (105134966-105134126)
               

               
               1-827, gnl|Mm7|chr10 (84068500-84067675)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               amn (0.417711)
               

               
               cov (0.396458)
               

               
               eru (0.360144)
               

               
               cje (0.330469)
               

               
               cag (0.302389)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               nbm (0.198649)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cov (0.396458)
               

               
               eru (0.360144)
               

               
               cje (0.330469)
               

               
               cag (0.302389)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               nbm (0.198649)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	1-827, gnl\|bosTau2\|chr5 (42106111-42105298)
	1-827, gnl\|Hg17\|chr12 (105134966-105134126)
	1-827, gnl\|Mm7\|chr10 (84068500-84067675)

	amn (0.417711)
	cov (0.396458)
	eru (0.360144)
	cje (0.330469)
	cag (0.302389)
	nca (0.273748)
	fce (0.271592)
	nbm (0.198649)
	sto (0.179824)
	duo (0.172801)
	cki (0.165235)
	csk (0.140746)
	cst (0.140036)
	ute (0.132784)
	ova (0.129132)
	ret (0.128733)
	ese (0.126502)
	eep (0.122564)
	ebs (0.118301)
	jca (0.11396)
	ldo (0.0970026)